CX671974

Overview
NameCX671974
Unique NameCX671974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1090_BORPE (UPF0061 protein BP1090 OS=Bordetella pertussis GN=BP1090 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 67/199 (33.67%), Postives = 96/199 (48.24%), Query Frame = -3
Query:  259 PDIGLWNIAQFSTTLAAAKLIDDKEA-NYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 843
            P +GLWN+ + +++L    L  D EA   V++ Y   F   +   M  KLGLP++   ++ ++  LL  M     D+T  FR L         P ++  +             + A  +W         S G + + R A M+ VNP YVLRN+L + AI AA  GD GE+  LLKL+  PY  QPG + YA L P WA
Sbjct:  294 PSVGLWNLYRLASSLHT--LAPDPEALRAVLDGYEAVFTQAFHGRMAGKLGLPQFLPEDETLLDDLLQLMHQQGADFTLAFRRLGEAVRGQRQPFEDSFID------------RAAAGAWYDRLAARHASDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKHQPGYDAYAGLAPDWA 478          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALTY (UPF0061 protein ydiU OS=Salmonella typhimurium GN=ydiU PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 65/200 (32.50%), Postives = 101/200 (50.50%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YAR PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYARRPPEWGKR 473          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_ECO7I (UPF0061 protein ydiU OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y + L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRRRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y398_PSEPW (UPF0061 protein PputW619_0398 OS=Pseudomonas putida (strain W619) GN=PputW619_0398 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 62/195 (31.79%), Postives = 98/195 (50.26%), Query Frame = -3
Query:  262 IGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 837
            I  WN++  +  L    +I+ +     +  +   +   Y  +M ++LGL         ++ +LL  M    VDY  FFR L +       P  E L  ++   +D+       + +W   Y+        + + R+  M++VNP YVLRNYL Q AI+AAE GD+ EVRRL +++  P++EQ GM+ YA  PPAW
Sbjct:  295 IAHWNLSALAQALTT--VIEVEPLKEALGLFLPLYQAHYLDLMRRRLGLTTAEDDDMALVERLLQRMQSGGVDYNLFFRRLGDQ------PVAEALKGVRDDFIDLA-----GFDAWGADYLARCEREAGNGDGRRERMHAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLSTPFEEQAGMQAYAERPPAW 476          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y2581_POLSJ (UPF0061 protein Bpro_2581 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=Bpro_2581 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 68/199 (34.17%), Postives = 103/199 (51.76%), Query Frame = -3
Query:  259 PDIGLWNIAQFSTTLAAAKLIDDKE-ANYVMERYGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 843
            P+I  WN+  F    A   LI+D+E A   +E Y T F    +A M  KLGL +    ++++I      +A +KVDYT F+R L                 ++ +  D     +E++ +W L Y + +  +G+    R  LM   NPK+VLRN+L + AI AA+L DF  V  LL L++ P+DE PG + ++  PP WA
Sbjct:  304 PNIAYWNL--FCLGQALLPLIEDQEQALAALESYKTVFPQALEARMRDKLGLVETQAGDRELIESTFKLLASNKVDYTIFWRRLCGFTPQSGHES------VRDLFFD-----RESFNAWALQYSERV--AGVDQGVRANLMLKSNPKFVLRNHLGEEAIRAAKLKDFSGVNTLLGLLQAPFDEHPGHDSFSDFPPDWA 487          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SHIFL (UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLREEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALAR (UPF0061 protein ydiU OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+  W   Y   L +  + D  R+  M SVNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTRYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDGWFDRYRARLRTEAVDDALRQQQMQSVNPAVVLRNWLAQRAIDAAEQGDMAELHRLHEILRQPFIDRD--DDYASRPPEWGKR 473          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSM (UPF0061 protein ydiU OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y + L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRRRLQQDEVSDIERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSE (UPF0061 protein ydiU OS=Escherichia coli (strain SE11) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDR--ADDYVSRPPDWGKR 471          
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLI (UPF0061 protein ydiU OS=Escherichia coli (strain K12) GN=ydiU PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = -3
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGERMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471          
The following BLAST results are available for this feature:
BLAST of CX671974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
Y1090_BORPE1.222e-2033.67UPF0061 protein BP1090 OS=Bordetella pertussis GN=... [more]
YDIU_SALTY1.597e-2032.50UPF0061 protein ydiU OS=Salmonella typhimurium GN=... [more]
YDIU_ECO7I1.597e-2032.00UPF0061 protein ydiU OS=Escherichia coli O7:K1 (st... [more]
Y398_PSEPW1.597e-2031.79UPF0061 protein PputW619_0398 OS=Pseudomonas putid... [more]
Y2581_POLSJ1.597e-2034.17UPF0061 protein Bpro_2581 OS=Polaromonas sp. (stra... [more]
YDIU_SHIFL3.557e-2032.00UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU ... [more]
YDIU_SALAR3.557e-2032.50UPF0061 protein ydiU OS=Salmonella arizonae (strai... [more]
YDIU_ECOSM3.557e-2032.00UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]
YDIU_ECOSE3.557e-2032.00UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]
YDIU_ECOLI3.557e-2032.00UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671974 ID=CX671974; Name=CX671974; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAAAATAAAAAATTGTAATAAATAAAATGATTTC
GAAATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATT
ATTTCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTC
GACTATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACA
TAATGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCT
GGTCGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGG
TTGCTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCAC
CAAAATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTT
CTAAGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTC
ATCTGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGC
TGATCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTC
AGTGGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATT
GGAAAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATAT
TGTTTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGT
TTCTTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCATATCT
TTCCATGACATAATTTGCCTCTTTATCATCTATCAATTTAGCTGCTGCTA
GAGTTGTGGAAAACTGTGCAATGTTCCACAAGCCAATATCAGGCT
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