CX671974

Overview
NameCX671974
Unique NameCX671974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALTI (UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYASRPPEWGKR 473
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALPB (UPF0061 protein ydiU OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAVVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYASRPPEWGKR 473
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALNS (UPF0061 protein ydiU OS=Salmonella newport (strain SL254) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDHYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYASRPPEWGKR 473
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALHS (UPF0061 protein ydiU OS=Salmonella heidelberg (strain SL476) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYASRPPEWGKR 473
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALDC (UPF0061 protein ydiU OS=Salmonella dublin (strain CT_02021853) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDHYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYASRPPEWGKR 473
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SALA4 (UPF0061 protein ydiU OS=Salmonella agona (strain SL483) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL     ID    N  ++RY    +  Y   M +KLG     K +  ++++L + MA +  DYT  FR LS+ +      +     PL+   +D     + A+ +W   Y   L +  + D  R+  M  VNP  VLRN+L Q AIDAAE GD  E+ RL +++ +P+ ++   + YA  PP W  R
Sbjct:  289 PSVALWNLQRLAQTLTPFIEID--ALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTE------QQSASSPLRDTFID-----RAAFDAWFDRYRARLRTEAVDDALRQQQMQRVNPAVVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRD--DDYASRPPEWGKR 473
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_ECOL5 (UPF0061 protein ydiU OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K+   ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    I+D ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL + +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSAASPLRDEFID-----RAAFDDWFARYRGRLQQDEITDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRD--DDYVSRPPDWGKR 471
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y2140_BURTA (UPF0061 protein BTH_I2140 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2140 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = -3 
Query:  259 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 843
            P IGL   A  S    A + ++D  A  V+ R+  +F    +  M  KLGL    + +  + ++LL  M   + D+T  FR L+ V    +  +     P++ + +D     ++A+  W   Y   L      D  R A MN  NPKYVLRN+L ++AI  A+  DF EV RL  ++ RP+DEQP  + YA LPP WA
Sbjct:  327 PLIGLHRDAP-SEDARAERAVEDAHA--VLGRFAEQFGPALERAMRAKLGLELEREGDAALANQLLEIMDASRADFTLTFRHLARVSKHDARGD----APVRDLFVD-----RDAFDRWANLYRARLSEEARDDAARAAAMNRANPKYVLRNHLAETAIRRAKEKDFSEVERLAAVLRRPFDEQPEHDAYAALPPDWA 512
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: Y1045_ALHEH (UPF0061 protein Mlg_1045 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=Mlg_1045 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 70/199 (35.18%), Postives = 103/199 (51.76%), Query Frame = -3 
Query:  271 PDIGLWNIAQFSTTLAAAKLIDDKEA----NYVMERYGTKFMDEYQAIMTKKLGLPKYNK---QIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAA-ELGDFGEVRRLLKLMERPYDEQPGMEKYARLP 843
            P I  WN+ + + TL      D+ EA       +  +  +F   + A +  KLGL +  +    +  +LL+ MA  + D+T  FRALS+ + D   P++    P +         R EA   W   +IQ L   G  +  R+A M +VNPK++LRN+L Q A+DAA E GDFG + RLL+++ RPYD QP  E  A  P
Sbjct:  293 PRIAHWNLTRLAETLLPLLHEDEDEAVARAGEALNGFLPRFEACHHARLRAKLGLAESRRGDIDLAHELLDLMARQQADFTQVFRALSDERMDD--PDEG---PARRCFA-----RPEALDGWRARWIQRLRQEGRPEPARQAAMRAVNPKFILRNHLAQWAVDAATERGDFGPMDRLLQVLTRPYDPQPEAEALAAPP 481
[Close]
BLAST of CX671974 vs. ExPASy Swiss-Prot
Match: YDIU_SHISS (UPF0061 protein ydiU OS=Shigella sonnei (strain Ss046) GN=ydiU PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.923e-20
Identity = 64/200 (32.00%), Postives = 98/200 (49.00%), Query Frame = -3 
Query:  253 PDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYR 843
            P + LWN+ + + TL+    +D    N  ++ Y    +  Y   M +KLG     K +  ++++L + MA ++ DYT  FR LS  +      +     PL+   +D     + A+  W   Y   L    +SD ER+ LM SVNP  VLRN+L Q AI+AAE GD  E+ RL   +  P+ ++   + Y   PP W  R
Sbjct:  287 PAVALWNLQRLAQTLSPFVAVD--ALNEALDSYQQVLLTHYGQRMRQKLGFITEQKEDNALLNELFSLMARERSDYTRTFRMLSLTE------QHSTASPLRDEFID-----RAAFDGWFARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHGALRNPFSDRD--DDYVSRPPDWGKR 471
The following BLAST results are available for this feature:
BLAST of CX671974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
YDIU_SALTI6.067e-2032.00UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU P... [more]
YDIU_SALPB6.067e-2032.00UPF0061 protein ydiU OS=Salmonella paratyphi B (st... [more]
YDIU_SALNS6.067e-2032.00UPF0061 protein ydiU OS=Salmonella newport (strain... [more]
YDIU_SALHS6.067e-2032.00UPF0061 protein ydiU OS=Salmonella heidelberg (str... [more]
YDIU_SALDC6.067e-2032.00UPF0061 protein ydiU OS=Salmonella dublin (strain ... [more]
YDIU_SALA46.067e-2032.00UPF0061 protein ydiU OS=Salmonella agona (strain S... [more]
YDIU_ECOL56.067e-2032.00UPF0061 protein ydiU OS=Escherichia coli O6:K15:H3... [more]
Y2140_BURTA6.067e-2034.34UPF0061 protein BTH_I2140 OS=Burkholderia thailand... [more]
Y1045_ALHEH6.067e-2035.18UPF0061 protein Mlg_1045 OS=Alkalilimnicola ehrlic... [more]
YDIU_SHISS7.923e-2032.00UPF0061 protein ydiU OS=Shigella sonnei (strain Ss... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14C03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C03-E6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671974 ID=CX671974; Name=CX671974; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAAAATAAAAAATTGTAATAAATAAAATGATTTC
GAAATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATT
ATTTCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTC
GACTATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACA
TAATGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCT
GGTCGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGG
TTGCTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCAC
CAAAATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTT
CTAAGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTC
ATCTGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGC
TGATCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTC
AGTGGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATT
GGAAAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATAT
TGTTTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGT
TTCTTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCATATCT
TTCCATGACATAATTTGCCTCTTTATCATCTATCAATTTAGCTGCTGCTA
GAGTTGTGGAAAACTGTGCAATGTTCCACAAGCCAATATCAGGCT
back to top