CX671971

Overview
NameCX671971
Unique NameCX671971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671971_ssr40 microsatellite CX671971_ssr40:40..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10886 contig Csv1_Contig10886:13..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.495e-23
Identity = 80/225 (35.56%), Postives = 111/225 (49.33%), Query Frame = 2
Query:  164 ESFDESFEGRWIVS--QKDE-YKGVWKRSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            E F++ +E +W+ S  ++DE   G W  +  + +    D G+   E  + YAI     E  S K  T+V Q+ V+ +  L+CGG Y+K L    +G V  K+F  ++PY IMFGPD CG +T KVH IL       GE   H +K      +D+LTHVYT IL+PD    ILID  EKQ  +     D  PP                    +  IPDP+  KP+
Sbjct:   28 ERFEDGWESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPE-FSNKGKTLVFQFSVKHEQKLDCGGGYMKLL----SGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILT-----KGE-TNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPP----KQIKDPEAKKPEDWEDKEYIPDPEDKKPE 237          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 70/220 (31.82%), Postives = 105/220 (47.73%), Query Frame = 2
Query:  173 DESFEGRWIVSQKD-----EYKGVWKRSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            D+S+E  W+ S+       ++K    +  S+  +D GL   E A+ YA+ ++  +P S +   +V+Q+ V+ +  ++CGG YLK     +     K+   E+PY IMFGPD CG  T KVH I  +K         H +K       D  TH+YT I+KPDN   +LID E+ +  +  A  DF P                       KI DP+A KP+
Sbjct:   29 DDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLP---------------------NKKIKDPEAKKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 72/237 (30.38%), Postives = 107/237 (45.15%), Query Frame = 2
Query:  128 LISASDDATILYESFDESFEGRWIVSQ-------KDEYKGVWKRSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            L+ A+       E+FD S+  RW  S          E+K    +   +   D G+  G  +K +AI   L           V+Q+ V+ +  L+CGG Y+K + P  +     EF  ++PY IMFGPD CG +T KVH IL +K         + +K      +D+LTHVYT ++KPDN  ++LID +E    +     D  PP                    R +I DP+  KP+
Sbjct:   12 LVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVV-PATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKN------YLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPP----KTIKDPKASKPEDWDEREEIADPEDKKPE 237          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.980e-20
Identity = 74/235 (31.49%), Postives = 110/235 (46.81%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEG--HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A+D A    E F   +++  RW+ S+   D  K V    K  G   +D GL   + A+ YA+  +  EP S K  T+V+Q+ V+ +  ++CGG Y+K      +G   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 80/236 (33.90%), Postives = 111/236 (47.03%), Query Frame = 2
Query:  131 ISASDDATILYESFDESFEGRWIVSQ--KDE-YKGVWKRSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A        E F++ +E RW+ S+  KDE   G W  +  + +   ED G+   E  + YAI  E  E  S KD T+VLQ+ V+ +  L+CGG Y+K L     G V  K    ++ Y I+  PD    +T KVH IL     K G+   H +K      +D+LTHVYT I++PD    ILID EEK   +     D  PP                      KI DP+A KP+
Sbjct:   20 VAAVAGEVFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPE-FSNKDKTLVLQFSVKHEQKLDCGGGYVKLL----GGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILT----KDGK--NHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPP---------------------KKIKDPEAKKPE 223          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 74/235 (31.49%), Postives = 108/235 (45.96%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A+D A    E F   +++  RW+ S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K       G   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PGGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.410e-20
Identity = 73/226 (32.30%), Postives = 104/226 (46.02%), Query Frame = 2
Query:  158 LYESFD-ESFEGRWIVSQ---KDEYKGVWKRSK--SEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            L E+FD E++E  WI S+   K+  K V       ++   D G+   + A+ YA  ++ D   S +D  +V+Q+ V+ +  ++CGG Y+K     +      +   ESPY IMFGPD CG  T KVH I  +K         H +        D  TH YT I++PDN   +LID E+ +  N     DF  P                    RA IPDPD  KP+
Sbjct:   23 LKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDG-FSNEDKPLVVQFSVKHEQNIDCGGGYVKLF---DCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAP----KKIKDPTATKPEDWDDRATIPDPDDKKPE 234          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.876e-19
Identity = 72/235 (30.64%), Postives = 106/235 (45.11%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A++ A    E F   + +  RW+ S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K           K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAAEPAVYFKEQFLDGDDWTNRWVESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.369e-19
Identity = 76/235 (32.34%), Postives = 107/235 (45.53%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.369e-19
Identity = 76/235 (32.34%), Postives = 107/235 (45.53%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPE 217          
The following BLAST results are available for this feature:
BLAST of CX671971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_BERST9.495e-2335.56Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_BOMMO3.608e-2231.82Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_CHLRE3.054e-2130.38Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_MOUSE1.980e-2031.49Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_MAIZE2.586e-2033.90Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_RAT3.377e-2031.49Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_DROME4.410e-2032.30Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_CRIGR4.876e-1930.64Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_MACFU6.369e-1932.34Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA6.369e-1932.34Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C01-E2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671971 ID=CX671971; Name=CX671971; organism=Citrus sinensis; type=EST; length=814bp
GATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTCTCTCTCTC
TCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCTCTCCTG
CTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGCTTCTGATGATGC
CACGATCTTGTACGAGTCGTTTGACGAGTCATTCGAAGGACGATGGATCG
TTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCGCTCAAAGAGTGAG
GGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCAGCAAAGAAGTACGC
GATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAACTGTTG
TCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGTGGTGCA
TATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAAGGAGTT
CGACAACGAATCTCCGTATATGATTATGTTTGGACCTGATAAATGTGGTG
CCACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAGAGTGGA
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAC
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