CX671971

Overview
NameCX671971
Unique NameCX671971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671971_ssr40 microsatellite CX671971_ssr40:40..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10886 contig Csv1_Contig10886:13..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.369e-19
Identity = 76/235 (32.34%), Postives = 107/235 (45.53%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-18
Identity = 73/235 (31.06%), Postives = 106/235 (45.11%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A++      E F   + +  RWI S+   D  K V    K  G +  D GL   + A+ YA+     EP S K   +V+Q+ V+ +  ++CGG Y+K      AG   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAAEPVVYFKEQFLDGDGWTERWIESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQPLVVQFTVKHEQNIDCGGGYVKLF---PAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.086e-18
Identity = 73/235 (31.06%), Postives = 106/235 (45.11%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQK--DEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++A+D      E F   + +  RWI S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K      AG    +   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++P+N   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAAADPTVYFKEQFLDGDGWTERWIESKHKPDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.853e-18
Identity = 75/235 (31.91%), Postives = 106/235 (45.11%), Query Frame = 2
Query:  131 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKRSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPD 814
            ++ ++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KP+
Sbjct:   14 LAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPE 217          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 62/169 (36.69%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  176 ESFEGRWIVSQKDEYKGVWKRSKSE--GHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGE 667
            E +  RW+ S  D   G ++ S  +  GH+  D GL   + ++ YAI     +P S K  T+V+QY V+ +  ++CGG Y+K   P +     K+ + +S Y IMFGPD CG    KVH IL  KN    +Y  H  K P     D  TH+YT IL+PD    + +DG+
Sbjct:   31 ERWRNRWVQSTNDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVF-PSDLD--QKKMNGKSQYYIMFGPDICGFDIKKVHVILYFKN----QY--HENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQ 189          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  176 ESFEGRWIVSQKDEYKGVWKRSKSE--GHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNK-VHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGE 667
            E +  RW+ S  D   G ++ S     GH+  D GL   + ++ YAI     +P S K  T+++QY V+ +  ++CGG Y+K L P +     K  + +S Y IMFGPD CG   K VH IL  KN    +Y  H  K       D  TH+YT +L+PD    + IDG+
Sbjct:   31 ERWRNRWVHSTNDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARF-KPFSNKGKTLIIQYTVKHEQKMDCGGGYIK-LFPADVD--QKNLNGKSQYYIMFGPDICGFDIKTVHVILHFKN----QY--HANKKSIRCKVDSFTHLYTLVLRPDLTYEVKIDGQ 189          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 61/169 (36.09%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  176 ESFEGRWIVSQKDEYKGVWKRSKSE--GHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGE 667
            E +  RW+ S  D   G ++ S  +  GH+  D GL   +  + YAI     +P S K  T+V+QY V+ +  ++CGG Y+K      A    K  + +S Y IMFGPD CG    KVH IL  KN        H  K       D  TH+YT IL+PD    + IDG+
Sbjct:   31 EHWRNRWLQSTNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVF---PADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNK------YHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQ 189          
BLAST of CX671971 vs. ExPASy Swiss-Prot
Match: CALX_YEAST (Calnexin homolog OS=Saccharomyces cerevisiae GN=CNE1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 70/263 (26.62%), Postives = 114/263 (43.35%), Query Frame = 2
Query:  134 SASDDATILYESFDESFEG---------RWIVSQKDEYKGV------WKRSKSE---GHEDYGLLVGEPAKKYAIVKELDEPLSLKD-GTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEF------DNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPP--SVPSDKLTHVYTAIL-KPDNELRILIDG---------EEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVK 808
            S   + T+  +SF E F+           WI S+    +G       W+ S+        D G+ V        I   L+ P+++ +  T+V+QYE++L N L CGGA++K +    +G+++ E       D E   ++ FGPD C    N V F +   +  + E    +L+  P   +     +H+YT I+ +     +ILIDG         E+K+K N      F+PP+                   R +IPDP+AVK
Sbjct:   21 SLLSNVTLAEDSFWEHFQAYTNTKHLNQEWITSEAVNNEGSKIYGAQWRLSQGRLQGSAWDKGIAVRTGNAAAMIGHLLETPINVSETDTLVVQYEIKLDNSLTCGGAFIKLM----SGFMNVEALKHYAPDTEGVELV-FGPDYCAPEINGVQFAINKVDKITHESKLRYLQEMPLSKLTDTSQSHLYTLIIDESAQSFQILIDGKTVMVREHIEDKKKVN------FEPPITPPLMIPDVSVAKPHDWDDRIRIPDPEAVK 272          
The following BLAST results are available for this feature:
BLAST of CX671971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_CERAE6.369e-1932.34Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_RABIT1.086e-1831.06Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_BOVIN1.086e-1831.06Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_HUMAN1.853e-1831.91Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR3_MOUSE4.128e-1836.69Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]
CALR3_BOVIN1.017e-1636.09Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]
CALR3_HUMAN1.734e-1636.09Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]
CALX_YEAST4.888e-1126.62Calnexin homolog OS=Saccharomyces cerevisiae GN=CN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C01-E2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671971 ID=CX671971; Name=CX671971; organism=Citrus sinensis; type=EST; length=814bp
GATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTCTCTCTCTC
TCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCTCTCCTG
CTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGCTTCTGATGATGC
CACGATCTTGTACGAGTCGTTTGACGAGTCATTCGAAGGACGATGGATCG
TTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCGCTCAAAGAGTGAG
GGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCAGCAAAGAAGTACGC
GATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAACTGTTG
TCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGTGGTGCA
TATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAAGGAGTT
CGACAACGAATCTCCGTATATGATTATGTTTGGACCTGATAAATGTGGTG
CCACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAGAGTGGA
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAC
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