CX671970

Overview
NameCX671970
Unique NameCX671970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.751e-29
Identity = 77/208 (37.02%), Postives = 116/208 (55.77%), Query Frame = -3
Query:  273 VGVFSKLTNAYCLVQIG-GSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 893
            +GV+   +++Y L     G++   +  E     +  VV+  + G R++G L  GN  G+LLP    D+E++ +R +L + V V  +  R +ALGN I CND   L    L++E  + ++D LGVEV   ++AG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL  N + A  G DTT  E++ I+
Sbjct:   20 IGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVGVLTTGNSRGILLPEGV-DREVELVRKAL-EGVEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEIARIQ 225          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.103e-29
Identity = 80/216 (37.04%), Postives = 116/216 (53.70%), Query Frame = -3
Query:  273 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 911
            FENS  +GVF   T+   L++ G  E         L   +PVV+ S+  +RIIG L AGN N +++P    D EL+ ++N+  +  +   V   + + +ALGN I  ND  AL  +   RE  + I D+LGVEV R  IAG + VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   + + +  N +    G  TT  E+  IE
Sbjct:    8 FENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPYVGSCMLANSYGVVVGHLTTGPEIVKIE 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.103e-29
Identity = 79/214 (36.92%), Postives = 118/214 (55.14%), Query Frame = -3
Query:  252 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 893
            +GV     +   +V  G  +S+  + +  L   +P++KT I G+ + G L AGN NGLL+       EL  LR      + V+ + ++L+A+GN I  ND+ AL +  L  E + +I + L VEV   +IAG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++ A +  N      G+ TT  EL+ I+ VF L E
Sbjct:   13 LGVSILAKDNVAIVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLISPYVFSHELDVLREH---DINVEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGACIIANSNGVIVGNKTTGPELARIDQVFNLFE 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.252e-28
Identity = 78/216 (36.11%), Postives = 111/216 (51.39%), Query Frame = -3
Query:  273 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 911
            FENS  +GV+   T+   L++ G  E         L   +P+++TSI  +RI+G   AGN N +++P    D EL+H++N L +  +  RIE     L+A GN I  ND  AL      RE  + + D+LGVEV R  I     VGS    +NRGGLVHP  + E+L+ L  L +V +  GT N G   + + +  N      G  TT  E+  IE
Sbjct:    8 FENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGSVGVVTNRGGLVHPEATDEELEWLRDLFKVDIYVGTANMGVPFVGSCMLANSHGVVVGHLTTGPEIVKIE 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 77/216 (35.65%), Postives = 111/216 (51.39%), Query Frame = -3
Query:  273 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 911
            FENS  +GVF   T+   L++ G  E         L   +PV++ S+  +RIIG L  GN N ++LP    D E++ ++ +L +  +   +     + +ALGN I  ND  AL      R+  + I ++LGVEV R  IAG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +   +  N      G  TT  E+  IE
Sbjct:    8 FENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIE 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.996e-27
Identity = 80/221 (36.20%), Postives = 111/221 (50.23%), Query Frame = -3
Query:  258 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 911
            FENS  +GVF   T+   LV+ G  E         L   +PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +   +  N      G  TT  E+  IE    L
Sbjct:    8 FENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.607e-27
Identity = 80/214 (37.38%), Postives = 111/214 (51.87%), Query Frame = -3
Query:  255 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLR 893
            +GV+    N   LV    +E      E  L   + V++T I    I G + AGN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  ND  A  G +TT  EL  I+   +LR
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVANDHGALVGDETTGPELMRIQQALRLR 224          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.807e-27
Identity = 76/216 (35.19%), Postives = 111/216 (51.39%), Query Frame = -3
Query:  273 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 911
            FENS  +GV+   T+   +++ G  E   +T    L   +P+++TS+  +RI+G   AGN N L++P    D EL  +   L +  +   +   + RL+A GN I  ND  AL   D  RE    I D+LGV V R  IA    VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   + + +  N +    G  TT  E+  IE
Sbjct:    8 FENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGSVGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPFVGSCMIANSYGVVVGHLTTGPEIVKIE 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.207e-26
Identity = 56/108 (51.85%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  204 FRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE---AQPSALVDEMRKSLID 518
            FR +IA N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  I +GL VNDW AFCG +TTATE++V+E +F+LR       + L+ ++R +L+D
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNTTATEITVVERIFQLRRDLGGGRANLLQQLRDTLVD 111          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.207e-26
Identity = 77/217 (35.48%), Postives = 114/217 (52.53%), Query Frame = -3
Query:  273 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 911
            FENS  +GV+ + T+   L++ G  E         L   +P+++TSI  +RI+G   AGN N +++P    D EL+ ++ +L +    + V   + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS    +N+GGLVHP  + E+L+ LS L  V +  GT N G   + + +  N +    G  TT  E+  IE
Sbjct:    8 FENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGSCMLANSYGVVVGHLTTGPEIVKIE 222          
The following BLAST results are available for this feature:
BLAST of CX671970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_AERPE4.751e-2937.02Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_PYRFU8.103e-2937.04Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_METST8.103e-2936.92Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_THEON5.252e-2836.11Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_PYRHO8.959e-2835.65Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRAB1.996e-2736.20Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_HYPBU2.607e-2737.38Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_THEGJ5.807e-2735.19Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_TRYCR2.207e-2651.85Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_PYRKO2.207e-2635.48Translation initiation factor 6 OS=Pyrococcus koda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C01-E2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671970 ID=CX671970; Name=CX671970; organism=Citrus sinensis; type=EST; length=913bp
TTTTTTGGGGTTAAAAACAACTTGAATTAAAAAAAAAAAAAGTTCAGCAT
CTGTCCTTTTTCTGAATATGATACTTCTGATTGAGATACAAGATTCTGGA
AAATAACATACTATCATTAAGGGAAAACATCTTCAGAGTTGACAAAAACT
GCTTCAACTTCATGACAAAAAAGACTGTAAGCCAAAGTAACTTAGACATA
ACTGTCAATTAAAGATTTCCTCATCTCGTCCACAAGGGCACTAGGTTGAG
CTTCCCTCAACTTGAAAACACTCTCAATAACAGAGAGTTCAGTTGCTGTG
GTGTCTGATCCACAGAATGCTGTCCAGTCATTCACAGTTAACCCAGCAGC
TATGACTTCGCTTCCACGGTTCACAGTCCCAGCCACCAAAGGTACTTGCA
AGAGAGTTGAAAGTTCATCCAAGTCTTCAATGGATGTGTGAGGGTGGACC
AAGCCTCCTCTGTTGGAGAAGGAACAGTAACTGCCAACAAGGATATTACC
AGCAATTGTCTGCCTAAAAACTTCTACTCCAAGAACATCTGCAATCATTT
CCTCTGTTTCCCTGTCAAGATCTGTGTGTGTAAGAGCAACATGGTCGTTG
CATGCTATACAATTGCCCAGGGCAGATAGCCTCTCTTCAATACGCTGAAC
GACAACTTGATCAGGTAGGCTGTTCCTCAAGTGTTGAAGTTCTTGGTCTG
TGGTAGTGTGTGGCAAGAGAAGCCCATTTTTGTTTCCAGCACAAAGCCGG
CCGATAATCCTAGTGCCACCAATAGATGTTTTAACAACAGGAATGACATC
TGCTAACTCAGCCTCAAATGTGCTGTAGAAGCTTTCAGAACCTCCAATTT
GCACCAAGCAATAAGCATTAGTGAGCTTGGAAAACACACCAACCTCACAT
GAATTCTCAAACA
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