CX671970

Overview
NameCX671970
Unique NameCX671970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.025e-23
Identity = 73/210 (34.76%), Postives = 114/210 (54.29%), Query Frame = -3
Query:  273 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 893
            +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   14 IGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.748e-23
Identity = 73/210 (34.76%), Postives = 114/210 (54.29%), Query Frame = -3
Query:  273 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 893
            +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   14 IGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.748e-23
Identity = 73/210 (34.76%), Postives = 114/210 (54.29%), Query Frame = -3
Query:  273 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 893
            +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   14 IGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.748e-23
Identity = 73/210 (34.76%), Postives = 114/210 (54.29%), Query Frame = -3
Query:  273 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVI--PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 893
            +GV+    N Y +V  G      S  +  +  ++   +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   14 IGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.982e-23
Identity = 71/212 (33.49%), Postives = 108/212 (50.94%), Query Frame = -3
Query:  264 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 893
            +GV+  + +   L+ +G    F  T   +LA  + V  + TSI  TR+IG LC  N  G+LLP T    E   L+  L  +V V  ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ IAG    G     +N G  +HP    ED+   S LL V +   ++N G   +++G+  N+     GS TT  E+ ++   F
Sbjct:   14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANNNCIIVGSLTTGPEIMMLTRAF 219          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.087e-23
Identity = 73/214 (34.11%), Postives = 109/214 (50.93%), Query Frame = -3
Query:  252 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 893
            +GVF+  T    LV         +  E E+ DV  V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R TIAG   VG     +N+G LVHP  +  + + L  +   P+  GT N G++++ +GL  N      GS+TT  EL  IE      E
Sbjct:   13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 218          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.644e-23
Identity = 66/216 (30.56%), Postives = 108/216 (50.00%), Query Frame = -3
Query:  264 FENSCEVGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 911
            +E    +G+F+++     +V    S  + +  +  L   + +VKT + G+ IIG L +GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG     +NRG LVH  ++  +L  L +   +P+  GT+N GS ++  GL  N      G +T+  E+  I  VF
Sbjct:    7 YEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLANSTGYLAGIETSGFEMGRIADVF 216          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.678e-23
Identity = 64/210 (30.48%), Postives = 103/210 (49.05%), Query Frame = -3
Query:  264 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 893
            +GV+    + + L+     E         L+  +   + S+ GTR++G   AGN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +    L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DTT  E+  ++ +F
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDTTGHEMMQLQRIF 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.933e-22
Identity = 70/214 (32.71%), Postives = 108/214 (50.47%), Query Frame = -3
Query:  252 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 893
            +GV+  +T++  L+     E F       L   + V+K SI G+ + G L  GN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+    L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +I A    N      G +TT  EL+ IE      E
Sbjct:   13 LGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221          
BLAST of CX671970 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.525e-22
Identity = 71/214 (33.18%), Postives = 106/214 (49.53%), Query Frame = -3
Query:  252 VGVFSKLTNAYCLVQIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 893
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L +GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  ++ +P+  G+VN GS ++  GL  N      GS TT  EL  IE VF   E
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVTTGFELGRIEEVFGFLE 220          
The following BLAST results are available for this feature:
BLAST of CX671970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_SULIL1.025e-2334.76Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIM1.748e-2334.76Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK1.748e-2334.76Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA1.748e-2334.76Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_NITMS2.982e-2333.49Translation initiation factor 6 OS=Nitrosopumilus ... [more]
IF6_METAC5.087e-2334.11Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METPE6.644e-2330.56Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_THEPD8.678e-2330.48Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METTH1.933e-2232.71Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_METMJ2.525e-2233.18Translation initiation factor 6 OS=Methanoculleus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14C01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14C01-E2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671970 ID=CX671970; Name=CX671970; organism=Citrus sinensis; type=EST; length=913bp
TTTTTTGGGGTTAAAAACAACTTGAATTAAAAAAAAAAAAAGTTCAGCAT
CTGTCCTTTTTCTGAATATGATACTTCTGATTGAGATACAAGATTCTGGA
AAATAACATACTATCATTAAGGGAAAACATCTTCAGAGTTGACAAAAACT
GCTTCAACTTCATGACAAAAAAGACTGTAAGCCAAAGTAACTTAGACATA
ACTGTCAATTAAAGATTTCCTCATCTCGTCCACAAGGGCACTAGGTTGAG
CTTCCCTCAACTTGAAAACACTCTCAATAACAGAGAGTTCAGTTGCTGTG
GTGTCTGATCCACAGAATGCTGTCCAGTCATTCACAGTTAACCCAGCAGC
TATGACTTCGCTTCCACGGTTCACAGTCCCAGCCACCAAAGGTACTTGCA
AGAGAGTTGAAAGTTCATCCAAGTCTTCAATGGATGTGTGAGGGTGGACC
AAGCCTCCTCTGTTGGAGAAGGAACAGTAACTGCCAACAAGGATATTACC
AGCAATTGTCTGCCTAAAAACTTCTACTCCAAGAACATCTGCAATCATTT
CCTCTGTTTCCCTGTCAAGATCTGTGTGTGTAAGAGCAACATGGTCGTTG
CATGCTATACAATTGCCCAGGGCAGATAGCCTCTCTTCAATACGCTGAAC
GACAACTTGATCAGGTAGGCTGTTCCTCAAGTGTTGAAGTTCTTGGTCTG
TGGTAGTGTGTGGCAAGAGAAGCCCATTTTTGTTTCCAGCACAAAGCCGG
CCGATAATCCTAGTGCCACCAATAGATGTTTTAACAACAGGAATGACATC
TGCTAACTCAGCCTCAAATGTGCTGTAGAAGCTTTCAGAACCTCCAATTT
GCACCAAGCAATAAGCATTAGTGAGCTTGGAAAACACACCAACCTCACAT
GAATTCTCAAACA
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