CX671968

Overview
NameCX671968
Unique NameCX671968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_USTMA (Nascent polypeptide-associated complex subunit alpha OS=Ustilago maydis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = -1
Query:  431 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQF---KAPDLSHVVSKPESSAMA----------QDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 778
            +RVT+++ +  L+VI++P+V+KS  +D Y++FGEAK ED+S   Q QAA+Q    +A +     S   SSA             DD  +DE GV+ KDI+LVM Q   SR KAVKALK ++GD+++AIM
Sbjct:   59 TRVTMRRPRGHLYVIAQPEVYKSSHSDVYIVFGEAKAEDMSQLAQAQAAQQMAQAEAQERLLAESLQNSSASGAEKKVEEEEEDDDSPIDEEGVDAKDIDLVMQQVSCSRRKAVKALKESNGDLINAIM 187          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_CANAL (Nascent polypeptide-associated complex subunit alpha OS=Candida albicans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 59/142 (41.55%), Postives = 89/142 (62.68%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQ-------------LQTQAAEQFKAPDLSH--VVSKPESSAMA--------QDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            SRVT K+  N+++ I  PDV++S    TYV+FGEAK++D++ +             LQ  AA+  K  D S   + +  E +++         +D+ E+DETG++PKDIE+V+ Q  VSRAKAVKAL+  DGD+V+AIM+L+
Sbjct:   38 SRVTFKQRGNLIYAIDSPDVYRS-AAGTYVVFGEAKVDDMNQRIAEAQAQQAQQEALQKAAADAGKTEDKSPEAITADLEKASLGDKKAEDEEEDEGEIDETGLDPKDIEIVVEQTQVSRAKAVKALRNHDGDMVNAIMDLS 178          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_LODEL (Nascent polypeptide-associated complex subunit alpha OS=Lodderomyces elongisporus GN=EGD2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS---------KPES-----------------SAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            SRVT K+  N+++ I  P+V++S    TYV+FGEAK++D++ ++    A+Q +   L    +          PE+                  A   D+EEVDETG+ PKDI+L++ Q  VSR  AVKALK  DGD+V+A+MEL+
Sbjct:   39 SRVTFKQRGNLIYAIDAPEVYRSQA-GTYVVFGEAKVDDMNQRIAEAQAQQAQQEALQKAAADAGAAGDDKSPEAITADLEKASLQGGESNADAAEDDNEEVDETGINPKDIDLIVEQTRVSRGSAVKALKKHDGDMVNALMELS 182          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_DEBHA (Nascent polypeptide-associated complex subunit alpha OS=Debaryomyces hansenii GN=EGD2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 55/144 (38.19%), Postives = 85/144 (59.03%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS---------KPESSAMAQ----------------DDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            +RVT K+  N+++ I +PDVF+S +  TYV+FGEAK++D++ ++     +Q +   LS             K + +  A                 DD EVDE+G++ KDI++++ Q  VSRAKAVKAL+  DGD+V+AIMEL+
Sbjct:   38 TRVTFKQRGNLIYAIDQPDVFRS-SAGTYVVFGEAKVDDMNKRIAEAQQQQAQQDALSKAAGETGEAGEEDKSQDAITADLEKASLNTNKIEEEEADDGEVDESGLDAKDIDIIVEQTQVSRAKAVKALRVHDGDMVNAIMELS 180          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_SCHPO (Nascent polypeptide-associated complex subunit alpha OS=Schizosaccharomyces pombe GN=egd2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQ------------DDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            +RV +++ KNIL +I++P V+KS + + Y++ G+  +ED+++Q +     Q +A +     +  E S  AQ             ++ VDETGV+ KDIELVM QA VSRAKAV ALK  + D+V+AIM LT
Sbjct:   43 TRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAAQARAFNESQKQATETKEEAAITEESGDAQPADTAKIEESFEQEKAVDETGVDAKDIELVMAQANVSRAKAVTALKENNSDVVNAIMSLT 172          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_PICST (Nascent polypeptide-associated complex subunit alpha OS=Pichia stipitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 54/140 (38.57%), Postives = 85/140 (60.71%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQ----TQAAEQFKAPDLSHVVSKPESSAMA-----------------QDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            +RVT K+  N+++ I  PDV++S    TYV+FGEAK++D++ ++      QAAE       +H   + + S  A                 +++ EVDE+G++ KDI++++ Q  VSRAKAVKAL+  DGD+V+AIMEL+
Sbjct:   38 TRVTFKQRGNLIYAIDAPDVYRS-AAGTYVVFGEAKVDDMNQRIADAQAAQAAETDAHAGHTHSHGEEDKSPEAITADLEKASLTEKIEEEEEEGEVDESGLDAKDIDIIVEQTQVSRAKAVKALRKHDGDMVNAIMELS 176          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_ASHGO (Nascent polypeptide-associated complex subunit alpha OS=Ashbya gossypii GN=EGD2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.810e-18
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAP-----DLSHVVSKPES----SAMAQDDE--EVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            +RVT +K  N +F I  PDV+K+   + YV+FGE K++D + +L   Q QAA   K P     D++   + P +    +A  ++DE  +VDE+G++ +DIELVM QA VSR KAVKAL+  + DIV+AIM L+
Sbjct:   36 TRVTFRKKNNQIFAIDNPDVYKTQGGN-YVVFGEPKVDDFTRRLARAQQQAASAAKDPQSIQADMAAAAAAPAAPAAPAAAPEEDEAGQVDESGLDGQDIELVMQQANVSRNKAVKALREHNSDIVNAIMSLS 167          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_KLULA (Nascent polypeptide-associated complex subunit alpha OS=Kluyveromyces lactis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.977e-18
Identity = 62/142 (43.66%), Postives = 78/142 (54.93%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKA-----PDLSHVVSKPESSAMAQ------------------DDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            SRVT KK    +F I +P+V+KS   + +V+FGEAK++D + +L  +A E  +      P     VSK   S  A                   DD EVDETG+   DIELVM QAGV RAKA KALK  D DIV+AIM L+
Sbjct:   36 SRVTFKKKDGQIFAIDRPEVYKSQGGN-FVVFGEAKVDDFTQRL-AKAQESLQQNEGVLPAGQDAVSKDPQSIQADMQAAADSATDKPSADDAVDDAEVDETGLNADDIELVMQQAGVPRAKAAKALKEHDSDIVNAIMALS 175          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_BABDI (Nascent polypeptide-associated complex subunit alpha OS=Babesia divergens PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.977e-18
Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSK------PESSAMAQDD----------------EEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            ++V +KKSK I FV++KPDV+K P +DTYVIFGEAK+ED+S     +AA++     LS  +         +SSA A                    + DE+ V   DI+LV++Q G +R +AV+AL    GDIV  IM+L+
Sbjct:   58 TKVCIKKSKQIYFVVNKPDVYKLPNSDTYVIFGEAKVEDMSQNSALEAAQRLS--QLSSALQAVGADRGTDSSAAAHASGHDHAHDHDHSHGDCASKADESSVNQSDIDLVVSQVGCTREQAVEALIKNKGDIVETIMQLS 196          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_YARLI (Nascent polypeptide-associated complex subunit alpha OS=Yarrowia lipolytica GN=EGD2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.109e-17
Identity = 53/148 (35.81%), Postives = 87/148 (58.78%), Query Frame = -1
Query:  425 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDL----------SSQLQTQAAE---------------QFKAPDLSHVVSKPESSAM-----AQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 778
            +RV +K+++  +FVI+ P+V+K+PT ++YV+FGEA+ ED+          ++Q Q  AAE               +  + D + + +  E++++     A+D+ E D TG+E  DI+LVM QA VSR KA+  LK  D D+V+ IM+L
Sbjct:   49 TRVVLKRTRQHIFVIANPEVYKTPTGNSYVVFGEAQHEDMQATARAAQIAAAQAQQAAAETGSVSEAAAAGEVGAELASKDPASITADLEAASLSKDEDAEDEAEADATGLEDSDIKLVMEQANVSRNKAINGLKKNDSDVVNTIMDL 196          
The following BLAST results are available for this feature:
BLAST of CX671968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_USTMA2.819e-2144.19Nascent polypeptide-associated complex subunit alp... [more]
NACA_CANAL1.399e-2041.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_LODEL1.185e-1938.62Nascent polypeptide-associated complex subunit alp... [more]
NACA_DEBHA5.879e-1938.19Nascent polypeptide-associated complex subunit alp... [more]
NACA_SCHPO7.678e-1941.22Nascent polypeptide-associated complex subunit alp... [more]
NACA_PICST2.918e-1838.57Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASHGO3.810e-1843.61Nascent polypeptide-associated complex subunit alp... [more]
NACA_KLULA4.977e-1843.66Nascent polypeptide-associated complex subunit alp... [more]
NACA_BABDI4.977e-1839.72Nascent polypeptide-associated complex subunit alp... [more]
NACA_YARLI1.109e-1735.81Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14B11-C22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671968 ID=CX671968; Name=CX671968; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTACGAGAGTGCAAATATTATTTTCCCTTTATATT
ATTTTCCCTTTTCTTTTCCTTGTTTAATGTCGAATCGTTTACAAGGAGAG
AAATGGGATCAACCACTGAAATTTTTGTAACCATAATTGTAAATCATTTT
AGCAAGAATCCTTCAGTCGACCATTCAGAAAAGCCTGGTCTTGATACAAA
GGAACTTAGTCAGGAACCAGTCACATATGAAAGAAAAACAAGTAAATTGC
CCAGCCAAAGCAAAAGGAATCACAAACAGTTCCATTTCACAATCAACAGC
TTTGCAGATTCTCTCCTCTTCAATTCCCACAGACAATATTGGGTATTTGG
TAATAAAGAATACTGTGGCGTGAAATGTTTTCTTGTGAGCAGCACACAAA
CATCTAAGAAAACTCTCAGTTGGTAAGCTCCATGATAGCTGAAACTATGT
CCCCATCTGCAGCCTTCAGCGCTTTCACAGCCTTTGCCCTGGAGACTCCT
GCCTGTGTCATTACTAACTCTATGTCCTTAGGCTCAACCCCGGTCTCATC
TACTTCTTCATCGTCCTGAGCCATGGCTGATGACTCAGGTTTGGAGACCA
CGTGGCTGAGATCAGGAGCCTTAAATTGCTCTGCTGCCTGAGTCTGCAAT
TGTGAGCTCAAGTCCTCGATCTTTGCCTCACCAAAGATTACATATGTATC
TGTTGTCGGGCTCTTGAAAACATCCGGTTTTGAGATAACAAACAAGATAT
TCTTGCTCTTTTTGACGGTAACCCGGCT
back to top