CX671968

Overview
NameCX671968
Unique NameCX671968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_DICDI (Nascent polypeptide-associated complex subunit alpha OS=Dictyostelium discoideum GN=nacA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 44/126 (34.92%), Postives = 76/126 (60.32%), Query Frame = -1
Query:  422 RVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQDDEEV--------DETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 775
            RVT+K+ + +L V+++P+V+ SP+ +TYV+FG+   +D++S+LQ    +      +   +  P +   +++ EE+        D  GV PKD+E+VM +   SR K V+ L A   D+VSA++ELT
Sbjct:   33 RVTIKQKEGVLVVVAEPEVYASPSGETYVVFGDHSFDDIASRLQKAVPKANVDDIVKAAMPAPTAVKESEESEEIVAQAVDSFDYKGVNPKDVEVVMKETKASREKVVETLIATKNDLVSAVLELT 158          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.658e-16
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = -1
Query:  425 RVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKA----------------------PDLSHVVSKPESSAMAQDDEEVDETG-----VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 775
            RVT+++++N+L V+S P+V+KSP +D Y++FGEAK+ED +S  Q QA  Q  A                       +L       +SSA A   E  D +      V  ++I+L++ Q GV  AKA +A  +  GD+++AIM+L
Sbjct:   47 RVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVEDPNSAAQLQAQAQLAASSQAAQQAHAHGGFKEGVPKSLEELMQDAPSTDSSAPAPSGEATDASASGDFKVSDEEIQLIVAQTGVDEAKAREAYISEKGDLINAIMKL 190          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_VANPO (Nascent polypeptide-associated complex subunit alpha OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.945e-16
Identity = 52/134 (38.81%), Postives = 76/134 (56.72%), Query Frame = -1
Query:  422 SRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQL---------------QTQAAEQFKAPDLSHVVSKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 778
            +RVT +K  N +F I  P+V++S   + YV+FGEAKI++ S +L               + Q   Q  A       +KP ++A   D+  VD   +  +DIELV +QA VS+ KA+KALK  +GDIV+AIM L+
Sbjct:   36 NRVTFRKKDNQIFAIDNPEVYRSQGGN-YVVFGEAKIDNFSQKLAAAQEKIQSVSKSPEEIQKDMQLAADQAGDESAKPAAAAEEDDEAPVDAGDLSAEDIELVASQANVSKNKAIKALKEHNGDIVNAIMALS 168          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_YEAST (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae GN=EGD2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.785e-15
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = -1
Query:  422 RVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAPDLSHVVSK-PE--------------SSAMAQDDEE--VDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 775
            RVT +K  N ++ I KP+VF+S     YV+FGEAK+++ + +L   Q QA      P    V +K PE              ++A  +DDEE  VD   +   DIELV+ Q  VS+ +A+KALKA +GD+V+AIM L+
Sbjct:   37 RVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_YEAS7 (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.785e-15
Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = -1
Query:  422 RVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAPDLSHVVSK-PE--------------SSAMAQDDEE--VDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 775
            RVT +K  N ++ I KP+VF+S     YV+FGEAK+++ + +L   Q QA      P    V +K PE              ++A  +DDEE  VD   +   DIELV+ Q  VS+ +A+KALKA +GD+V+AIM L+
Sbjct:   37 RVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of CX671968 vs. ExPASy Swiss-Prot
Match: NACA_CANGA (Nascent polypeptide-associated complex subunit alpha OS=Candida glabrata GN=EGD2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.556e-14
Identity = 47/129 (36.43%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  422 RVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAPDLSHVVSKPESSAMAQD--------DEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 775
            RVT +K  N +F I KP+VF+S     YV+FGEAK+++ + +L   Q QA  Q        + +  +++A+A +        +E+VD   +   DI+LV+ Q   ++ +A+KALK  +GDIV+AIM L+
Sbjct:   37 RVTFRKKDNQIFAIEKPEVFRS-VGGNYVVFGEAKVDNFTQRLAAAQQQAQSQTATKTPEDIQADMQAAAVANENKTEGDAAEEDVDAGDLSNDDIDLVVQQTNATKGQAIKALKEHNGDIVNAIMSLS 164          
The following BLAST results are available for this feature:
BLAST of CX671968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_DICDI7.186e-1734.92Nascent polypeptide-associated complex subunit alp... [more]
NACA_CRYNE4.658e-1634.72Nascent polypeptide-associated complex subunit alp... [more]
NACA_VANPO7.945e-1638.81Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAST8.785e-1539.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAS78.785e-1539.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_CANGA2.556e-1436.43Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_14B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14B11-C22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671968 ID=CX671968; Name=CX671968; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTACGAGAGTGCAAATATTATTTTCCCTTTATATT
ATTTTCCCTTTTCTTTTCCTTGTTTAATGTCGAATCGTTTACAAGGAGAG
AAATGGGATCAACCACTGAAATTTTTGTAACCATAATTGTAAATCATTTT
AGCAAGAATCCTTCAGTCGACCATTCAGAAAAGCCTGGTCTTGATACAAA
GGAACTTAGTCAGGAACCAGTCACATATGAAAGAAAAACAAGTAAATTGC
CCAGCCAAAGCAAAAGGAATCACAAACAGTTCCATTTCACAATCAACAGC
TTTGCAGATTCTCTCCTCTTCAATTCCCACAGACAATATTGGGTATTTGG
TAATAAAGAATACTGTGGCGTGAAATGTTTTCTTGTGAGCAGCACACAAA
CATCTAAGAAAACTCTCAGTTGGTAAGCTCCATGATAGCTGAAACTATGT
CCCCATCTGCAGCCTTCAGCGCTTTCACAGCCTTTGCCCTGGAGACTCCT
GCCTGTGTCATTACTAACTCTATGTCCTTAGGCTCAACCCCGGTCTCATC
TACTTCTTCATCGTCCTGAGCCATGGCTGATGACTCAGGTTTGGAGACCA
CGTGGCTGAGATCAGGAGCCTTAAATTGCTCTGCTGCCTGAGTCTGCAAT
TGTGAGCTCAAGTCCTCGATCTTTGCCTCACCAAAGATTACATATGTATC
TGTTGTCGGGCTCTTGAAAACATCCGGTTTTGAGATAACAAACAAGATAT
TCTTGCTCTTTTTGACGGTAACCCGGCT
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