CX671881

Overview
NameCX671881
Unique NameCX671881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1192 contig Csv1_Contig1192:408..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: ZDH1_STAEQ (Zinc-type alcohol dehydrogenase-like protein SERP1785 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1785 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 52/184 (28.26%), Postives = 91/184 (49.46%), Query Frame = 3
Query:  189 VPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAKL-GNTHVTASCGARNIEFVKSLGADEVLDYK 734
            +P PS  E+L+K+++ ++NPVD K      R     K P +   D             +F+ GD  V F +      G   E+ + +E      P+ + + + + LP+ GLTA++ L    G+  + S  + K++L+   +GGVG  A Q+AK  G   +T +     I++  ++GAD VL++K
Sbjct:   25 IPHPSGHELLVKVQSISVNPVDTK-----QRTMPVDKAPRVLGFDAVGVIEKIGDQVSMFQEGD--VVFYSGSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAKFYGLKVITTASREDTIKWSVNMGADVVLNHK 201          
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: ZDH1_STAAR (Zinc-type alcohol dehydrogenase-like protein SAR2277 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2277 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 51/183 (27.87%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  192 PTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQ-QKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYK 734
            PTP  D++L+K+ + ++NPVD K ++ ++      + P +   D             +F  GD  V F        G  A + +  E+     P  +SA E   LP+ G+TA++    +  +  + S    K++L+   +GGVG  A Q+AK  G T +T +      E+ + +GAD VL++K
Sbjct:   26 PTPENDDILVKVNSISVNPVDTKQRQMEV-----TQAPRVLGFDAIGTVEAIGPNVTLFSPGD--VVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENIGKSVLIINGAGGVGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHK 201          
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: ZDH1_STAAN (Zinc-type alcohol dehydrogenase-like protein SA1988 OS=Staphylococcus aureus (strain N315) GN=SA1988 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 52/183 (28.42%), Postives = 85/183 (46.45%), Query Frame = 3
Query:  192 PTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYK 734
            PTP  D++L+K+ + ++NPVD K      R     + P +   D             +F  GD  V F        G  A + +  E+     P  +SA E   LP+ G+TA++    +  +  + S    K++L+   +GGVG  A Q+AK  G T +T +      E+ + +GAD VL++K
Sbjct:   26 PTPENDDILVKVNSISVNPVDTK-----QRQMKVTQAPRVLGFDAIGTVEAIGPDVTLFSPGD--VVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENVGKSVLIINGAGGVGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHK 201          
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: ZDH1_STAAM (Zinc-type alcohol dehydrogenase-like protein SAV2186 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2186 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 52/183 (28.42%), Postives = 85/183 (46.45%), Query Frame = 3
Query:  192 PTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGS-GQQKNILVTAASGGVGHYAVQLAK-LGNTHVTASCGARNIEFVKSLGADEVLDYK 734
            PTP  D++L+K+ + ++NPVD K      R     + P +   D             +F  GD  V F        G  A + +  E+     P  +SA E   LP+ G+TA++    +  +  + S    K++L+   +GGVG  A Q+AK  G T +T +      E+ + +GAD VL++K
Sbjct:   26 PTPENDDILVKVNSISVNPVDTK-----QRQMKVTQAPRVLGFDAIGTVEAIGPDVTLFSPGD--VVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENVGKSVLIINGAGGVGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHK 201          
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 76/226 (33.63%), Postives = 102/226 (45.13%), Query Frame = 3
Query:  156 GAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVA--FLNYLV--------------TNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGA-RNIEFVKSLGADEVLDY-KTPDGA--ALKSPSG 770
            G   LK  E  VP   +  EVL+KL+A +LN  D  I KG L P LP + P +P +D            + F+ GD VV   F NYL               T  G   ++AV    + V  P  +S  E + LP A +TA   L    G K        N+LV   +GGV  +A+Q A     +VT +  +   +EF K LGA   ++Y KTP  A  ALK  +G
Sbjct:   13 GFDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKG-LYP-LPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVVCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLF---GSKEHQVKPGNNVLVLG-TGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTINYKKTPQWASPALKMTNG 232          
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: RT4I1_DICDI (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 57/209 (27.27%), Postives = 95/209 (45.45%), Query Frame = 3
Query:  123 MHAVQYNSYGGGAADLKH-VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF--LPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK--LGNTHVTASCGARNIEFVKSLG-ADEVLDY 731
            M  +  N YG     L++  +LPVP P K +VL+K+ +T++NP+D  ++KG       L  K P I   +              ++ GD+V +       + G   E+    ES    +P  ++  + + +P A LTA  A+          +   K ILV   +G VG + +QL K  L    V+ +C  ++ E +K L   +E +DY
Sbjct:    1 MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLKLKLPIILGRECSGEIVEIGDSVWDYEIGDQVWSASPPF--SMGSHCEYITVDESEISLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTK-ILVNGGNGSVGFFILQLLKKHLNVNQVSTTCNIKHFEKLKKLTLVNETIDY 206          
BLAST of CX671881 vs. ExPASy Swiss-Prot
Match: TOXD_COCCA (Protein TOXD OS=Cochliobolus carbonum GN=TOXD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 58/189 (30.69%), Postives = 79/189 (41.80%), Query Frame = 3
Query:  189 VPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFP--CIPATDXXXXXXXXXXXXKI-FKAGDKVVAFL---NYLVTNGGGLAEFAVAKESSTVARPSEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKN--ILVTAASGGVGHYAVQLAKLGNTHVTASCGARNIEFVKSLGADEVLDY 731
            +P    D +L++  + ALNP DWK         + R  P  C+   D            K  FK GD+V  F    N + ++ G  AE    K       P  +S  E + L V   T  Q L QS  +    +  +    IL+   S   G  A+QLAKL    V  +C   + E +KSLGAD V DY
Sbjct:   23 IPKLRDDYILVRTVSVALNPTDWK--------HILRLSPPGCLVGCDYAGIVEEVGRSVKKPFKKGDRVCGFAHGGNAVFSDDGTFAEVITVKGDIQAWIPENLSFQEAATLGVGIKTVGQGLYQSLKLSWPTTPIEHAVPILIYGGSTATGTLAIQLAKLSGYRVITTCSPHHFELMKSLGADLVFDY 203          
The following BLAST results are available for this feature:
BLAST of CX671881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ZDH1_STAEQ1.063e-1228.26Zinc-type alcohol dehydrogenase-like protein SERP1... [more]
ZDH1_STAAR1.063e-1227.87Zinc-type alcohol dehydrogenase-like protein SAR22... [more]
ZDH1_STAAN1.389e-1228.42Zinc-type alcohol dehydrogenase-like protein SA198... [more]
ZDH1_STAAM1.389e-1228.42Zinc-type alcohol dehydrogenase-like protein SAV21... [more]
YGD6_SCHPO1.389e-1233.63Zinc-type alcohol dehydrogenase-like protein C1773... [more]
RT4I1_DICDI2.005e-1127.27Reticulon-4-interacting protein 1 homolog, mitocho... [more]
TOXD_COCCA9.953e-1130.69Protein TOXD OS=Cochliobolus carbonum GN=TOXD PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F11-K21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671881 ID=CX671881; Name=CX671881; organism=Citrus sinensis; type=EST; length=771bp
CACTGCGTTACATACATATTATAATCGTATGCAGAGTGGTCTCTTTGATT
CTATCGATAGCACACTCGAAATCCCAGAAACGGCATCGTGTATTAGCTGT
GAAAATGGCAGGAAAGCCTCTTATGCACGCGGTTCAGTATAATTCTTATG
GTGGAGGAGCTGCTGATTTGAAGCATGTTGAACTGCCGGTTCCTACCCCA
AGCAAAGATGAGGTTTTGCTTAAACTTGAAGCAACTGCTCTAAATCCGGT
TGACTGGAAAATCCAGAAGGGCCAGTTACGCCCTTTTTTGCCTCGCAAGT
TTCCTTGCATACCTGCAACTGATGTAGCAGGAGAGGTCGTAGGGGTAGGA
TCAGAAGTTAAAATTTTCAAAGCTGGTGACAAAGTTGTAGCTTTTCTTAA
CTACCTCGTAACTAATGGAGGTGGACTAGCTGAGTTTGCTGTGGCTAAGG
AGAGCTCGACAGTTGCTAGGCCATCAGAGGTTTCAGCAGCTGAAGGTTCT
GGCTTGCCTGTTGCTGGTCTCACTGCTCACCAGGCCCTTACTCAATCTGC
AGGTGTCAAGCTTGATGGAAGTGGGCAACAGAAAAACATTCTAGTAACTG
CTGCCTCAGGGGGTGTAGGTCACTATGCTGTTCAGTTGGCGAAGCTTGGA
AACACGCACGTGACTGCCTCTTGTGGGGCTCGCAACATTGAATTTGTCAA
GAGTTTAGGGGCTGATGAGGTTCTTGATTACAAGACACCTGACGGGGCAG
CTCTAAAGAGTCCATCTGGTC
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