CX671877

Overview
NameCX671877
Unique NameCX671877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671877_ssr145 microsatellite CX671877_ssr145:145..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9717 contig Csv1_Contig9717:28..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_RHIME (Pyruvate, phosphate dikinase OS=Rhizobium meliloti GN=ppdK PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 3 
Query:  438 KRVFTFGKGRSEGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            K V+TFG G++EG+   +  LGGKGANLAEM  +GL VPPGLTI T AC  Y + G+                     G + GD ++PLLL
Sbjct:    3 KWVYTFGAGQAEGSAEDRDRLGGKGANLAEMCNLGLPVPPGLTIVTAACNSYLEKGRSMPEGLREQVREGITRMEKITGRVFGDTNRPLLL 93
[Close]
BLAST of CX671877 vs. ExPASy Swiss-Prot
Match: PPDK_CLOSY (Pyruvate, phosphate dikinase OS=Clostridium symbiosum GN=ppdK PE=1 SV=5)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 3 
Query:  471 EGNKGMKSLLGGKGANLAEMSTIGLSVPPGLTISTEACQEYQQNGKKXXXXXXXXXXXXXXXXXXXMGALLGDPSKPLLL 710
            EGN  M++LLGGKG NLAEM+ +G+ +P G T++TEAC EY  +GK+                    G   GD   PLL+
Sbjct:   10 EGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFGDTEDPLLV 89
The following BLAST results are available for this feature:
BLAST of CX671877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PPDK_RHIME6.406e-1443.96Pyruvate, phosphate dikinase OS=Rhizobium meliloti... [more]
PPDK_CLOSY3.886e-1141.25Pyruvate, phosphate dikinase OS=Clostridium symbio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13F09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F09-K17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671877 ID=CX671877; Name=CX671877; organism=Citrus sinensis; type=EST; length=711bp
ATCAACCCACACACGCACACAGACGTGCCCATATATCTTTCCTTTCTCCT
TCAATCTTCTGCAGTATATCAGTAGTAGAAGGGAAAAAAATGTGTTCAAT
AACGAATATGAAGGGAACGGTCATAAGAAGTACACCAGACGTATGCAGCA
GCAGCAGTACTCGGAGGCTGTACACGTTGAAGGCGAAGTATGCGGACGAC
GCCGATCTTCTCAGTCTTAGAGAGAACCATTCGTTATGCCTACTTCGTTT
GAGCCGTTCTTGCAGAGGCACTCGCTGTGAACATGCGGGTAATAAATGCT
TCTTAGAAACAAAGGCAGGGGCAGGAAGATATGACCAGCCTCAGCCTGCA
ACAGCAGCGGTACCAGCACTACGCGGTCGTATGAAACCAAAAGCAATCCT
CACTCCTGTTTCAGACGCAACATCACCAACTACAGAAAAGCGGGTGTTTA
CTTTCGGGAAAGGAAGGAGTGAAGGCAACAAGGGCATGAAGTCCTTGCTG
GGGGGCAAGGGAGCAAACCTGGCGGAAATGTCAACCATTGGACTATCTGT
GCCTCCCGGACTCACCATATCTACAGAAGCATGCCAGGAGTATCAGCAGA
ATGGAAAGAAGCTATCAGAAGGCTTGTGGGAAGAGGTATTGGAAGGCCTG
GAGACGGTGGAGAAAGAAATGGGAGCTCTTCTCGGCGACCCTTCCAAGCC
TCTTCTCCTCT
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