CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 99/170 (58.24%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + +  GV+ LAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + +GIE+     V  LK++SK +E  E +A VA++SA +  EVG++IAEAM +VG
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDALADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGIEQAVAVAVESLKEISKPIEGKESIAQVASISAADE-EVGSLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 97/171 (56.73%), Postives = 127/171 (74.27%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAKD+ F+ D  A ++L  GV+ LA+ V VTLGPKGRNVV+E  +G+P+I  DGVTVAKE+EL D  EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+K   A+V ELK+ +K++   SE A V  +SA    E+G MI+EAM KVG
Sbjct:    2 AAKDVRFSAD--ARERLIRGVDLLANAVKVTLGPKGRNVVIEKSFGSPRITKDGVTVAKEIELADKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDKAVNAIVDELKKRTKKITTPSETAQVGTISANGEAEIGKMISEAMQKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 95/171 (55.56%), Postives = 129/171 (75.44%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK++ F+ D  A +K+  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KT+DLAGDGTTT+ VLAQ ++ EG K VA+G NP+ + RGI+K  +A+V ELK  +++V  + E+A V  +SA  + E+G  +AEAM KVG
Sbjct:    2 AAKEVKFHSD--AREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTSDLAGDGTTTATVLAQAIVKEGAKAVASGMNPMDLKRGIDKAVEAIVQELKTNARKVTRNDEIAQVGTISANGDAEIGRFLAEAMQKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_PARUW (60 kDa chaperonin 2 OS=Protochlamydia amoebophila (strain UWE25) GN=groL2 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 97/171 (56.73%), Postives = 129/171 (75.44%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK + F +D  A +K+  GV  LAD V VTLGPKGRNVV++  YG P I  DGVTVAKE+ELED  EN+GA++V++ A+KT D AGDGTTT+ VLA+ + +EG++ VAAGANP+ + RG+EK  K +V ELK+ SK V+D +E+A VA +SA N+ E+G MIA+A+ KVG
Sbjct:    2 AAKIIKFKED--ARQKILKGVRTLADAVKVTLGPKGRNVVIDKSYGTPHITKDGVTVAKEIELEDKFENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYSEGLRNVAAGANPLDLKRGMEKAVKVIVQELKKRSKTVDDRNEIAQVATISANNDAEIGEMIAQAIEKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_SACEN (60 kDa chaperonin 1 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.110e-46
Identity = 97/170 (57.06%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + F++D  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAGA+P+ + RGIEK ++A+  +L + +KE+E   ++A  AA+SAG+  ++G +IAEAM KVG
Sbjct:    2 AKMIAFDED--ARRGLERGMNTLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPWEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGASPIALKRGIEKATEAIAEQLLKSAKEIETKDQIAATAAISAGDR-QIGELIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 94/170 (55.29%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++ A KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++SA +  E+GN+IAEAM KVG
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEVATKTNDVAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASISAADE-EIGNLIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 94/170 (55.29%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++ A KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++SA +  E+GN+IAEAM KVG
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEVATKTNDVAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASISAADE-EIGNLIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 101/170 (59.41%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + L  GV+KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK +EL+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V EL ++S +VE   ++A+VAAVS+ +  EVG +IA+AM KVG
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIELKDRYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVESKDQIANVAAVSSASK-EVGALIADAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 101/170 (59.41%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + L  GV+KLAD V  TLGPKGRNVVLE  YGAP I NDGVT+AK ++L+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIE  +KA V EL ++S +V    E+A VA+VS+ +  EVGN+IA+AM KVG
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTLGPKGRNVVLEKSYGAPDITNDGVTIAKSIDLKDHFENMGAKLVSEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIETATKAAVDELHKISHKVSTKDEIAQVASVSSAST-EVGNLIADAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 99/170 (58.24%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK L F +D  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+GAP I NDGV++A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+LI  GI+      V E++++SK+V+  E +A VAA+SA +  EVG +IA+AM KVG
Sbjct:    2 AKMLKFGED--ARRSMQIGVDKLADTVKVTLGPKGRNVVLDKKFGAPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRTGIKMAVDKAVEEIQKISKQVDGKEDIARVAAISAADE-EVGKLIADAMEKVG 168          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACLD1.110e-4658.2460 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH60_ACICJ1.110e-4656.7360 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH602_RHILO1.110e-4655.5660 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH602_PARUW1.110e-4656.7360 kDa chaperonin 2 OS=Protochlamydia amoebophila ... [more]
CH601_SACEN1.110e-4657.0660 kDa chaperonin 1 OS=Saccharopolyspora erythraea... [more]
CH60_THEPX1.449e-4655.2960 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP31.449e-4655.2960 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH60_LACH41.449e-4659.4160 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_LACGA1.449e-4659.4160 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_CLOB81.449e-4658.2460 kDa chaperonin OS=Clostridium beijerinckii (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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