CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 93/170 (54.71%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++++++K + DS  +A    ++AGN+ EVG MIA+AM KVG
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKKGIDKASDFLVSKIEELAKPISDSNAIAQCGTIAAGNDEEVGQMIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 96/170 (56.47%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + F+++  A + L+ G+ KL + V VTLGP+GRNVVLE K+GAP I NDGVT+AKEVELEDP+EN+GA LVR+ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGIEK   A+V  LK  ++ VE  + ++ VA++SA N+ ++G ++A+AM KVG
Sbjct:    2 AKQVVFDRE--AREALEKGITKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVREVASKTNDVAGDGTTTACVLAQAIVREGMKNVAAGANPMFMKRGIEKAVAAVVENLKAQARPVETKDSISQVASISA-NDPQIGALVADAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 94/170 (55.29%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G+K VAAGAN + + +GI+K ++ LV ++K  SK + DS  +A    ++AGN+ EVG MIA+AM KVG
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLKNVAAGANAITLKKGIDKATEFLVEKIKDHSKPISDSNAIAQCGTIAAGNDEEVGKMIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 93/170 (54.71%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N+   A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++++++K + DS  +A    ++AGN+ EVG MIA+AM KVG
Sbjct:    2 AKRIIYNEQ--ARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAISLKKGIDKASDFLVSKIEELAKPISDSNAIAQCGTIAAGNDEEVGQMIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 92/185 (49.73%), Postives = 138/185 (74.59%), Query Frame = 3
Query:  213 QSVALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            Q+   R AR   I AA       D  + ++LQ G+NK+AD VGVTLGP+GRNVVLE K+G P+++NDGV++ + +EL+DPVEN GA+L+++ A +TND AGDGTTT+ VLA+ +I  G++ V AGANP+ + RG++KT++ LV++LK+ +K V+   ++ +VA++SAGN+  +G MIA+A+ KVG
Sbjct:   19 QNKPARAARRLVIRAADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVG 203          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 94/170 (55.29%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + + ++  A + L+ GVN +AD V VTLGP+GRNVVL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++AA KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++SA +  E+G +IAEAM KVG
Sbjct:    2 AKQIKYGEE--ARRALERGVNAVADTVKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEAATKTNDIAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASISAADE-EIGKLIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LYSSC (60 kDa chaperonin OS=Lysinibacillus sphaericus (strain C3-41) GN=groL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 98/170 (57.65%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F++D  ++  +  GV+KLA+ V +TLGPKGRNVVLE K+G+P I NDGVT+AKE+ELE+P EN+GAKLV + A+KTN++AGDGTTT+ VLAQ +I EG+K V AGANPV I +GI+K   A ++EL  +S+ V +  E+A VAA+SA ++ EVG +IAEAM +VG
Sbjct:    2 AKDIKFSEDARSL--MLQGVDKLANAVKITLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPYENMGAKLVAEVASKTNEIAGDGTTTATVLAQAIIREGLKNVTAGANPVGIRKGIDKAVAAALTELHTISRPVSNKDEIAQVAAISAADD-EVGQLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 97/171 (56.73%), Postives = 130/171 (76.02%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK + F+++  A   +  GVN LAD V VTLGPKGRNVV+E  YGAP I  DGVTVAKE+ELED  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RG+++  +ALV+ELK +SK ++D  E+A V  +SA N+  +G++IAEAM KVG
Sbjct:    2 AAKIIKFDQE--ARNCILKGVNTLADAVKVTLGPKGRNVVIEKSYGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGLDQAVEALVAELKNISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 99/170 (58.24%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A + ELK +SK +E  S +A VAA+S+ +  EVG +IAEAM +VG
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKAISKPIEGKSSIAQVAAISSADE-EVGQLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACCN (60 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.893e-46
Identity = 100/170 (58.82%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK     V ELK +SK +E  S +A VAA+SA +  EVG +IAEAM +VG
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVATAVEELKTISKPIEGKSSIAQVAAISAADE-EVGQLIAEAMERVG 168          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROMM1.449e-4654.7160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_MOOTA1.449e-4656.4760 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH601_PROMT1.449e-4655.2960 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_PROM31.449e-4654.7160 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
RUBA_CHLRE1.893e-4649.73RuBisCO large subunit-binding protein subunit alph... [more]
CH60_THEBR1.893e-4655.2960 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH60_LYSSC1.893e-4657.6560 kDa chaperonin OS=Lysinibacillus sphaericus (st... [more]
CH60_GEOBB1.893e-4656.7360 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH60_BACWK1.893e-4658.2460 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_BACCN1.893e-4658.8260 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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