CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:13..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.072e-49
Identity = 100/170 (58.82%), Postives = 135/170 (79.41%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED VEN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K +  LV ++ + ++++EDS+ +A V A+SAGN+ EVG MIAEAM KVG
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKAAGFLVEKIAEHARQIEDSKAIAQVGAISAGNDEEVGKMIAEAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.072e-49
Identity = 100/170 (58.82%), Postives = 136/170 (80.00%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K ++ LV ++ + ++ VEDS+ +A VAA+SAGN+ EVG MIA+AM KVG
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKATQFLVEKIAEHARPVEDSKAIAQVAAISAGNDEEVGRMIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.401e-49
Identity = 99/170 (58.24%), Postives = 136/170 (80.00%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + FN++  A KKL+NGV+ L++ V VTLGPKGRNVV+E  YG+P I NDGVT+AKE+ELEDP EN+GA+L+++ A K ND+AGDGTTT+ VLAQ ++ EG+K++ AG+NPV + RGIEK +K  VS L+  SK++  +SE+A VA++SAG+  E+GN+IA+AM KVG
Sbjct:    2 AKIIKFNEE--ARKKLENGVDVLSNTVKVTLGPKGRNVVIEKSYGSPLITNDGVTIAKEIELEDPFENMGAQLIKEVATKANDVAGDGTTTATVLAQAMVKEGLKMITAGSNPVFVKRGIEKATKKAVSILETKSKKIAGNSEIAQVASISAGDE-EIGNLIAKAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_HELMI (60 kDa chaperonin OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=groL PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.401e-49
Identity = 102/170 (60.00%), Postives = 136/170 (80.00%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELE+P+EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP+++ RGIEK  +  V+E+K ++K VE  E +A VAA+SAG +  +GN+IAEAM KVG
Sbjct:    2 AKMIVFNEE--ARRALEKGVNTLAEAVRVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPIENMGAQLVKEVATKTNDVAGDGTTTATILAQAIIREGMKNVAAGANPMVLKRGIEKAVEKAVAEIKAIAKPVESKEAIAQVAAISAG-DATIGNLIAEAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.829e-49
Identity = 101/170 (59.41%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK+L F++D  A + L+ GV+ LA+ V VTLGPKGRNVVLE  +GAP I NDGV++A+E+ELE+  EN+GA+ V++ A KTND+AGDGTTT+ VLAQ +  EG+K VAAGANP+++ RGIEK  + LV E+K++SK VE  E ++ VAA+SAGN+ EVG +IAEAM KVG
Sbjct:    2 AKELKFSED--ARRALERGVDTLANAVKVTLGPKGRNVVLEKSFGAPTITNDGVSIAREIELENHYENMGAQTVKEVATKTNDVAGDGTTTATVLAQAIFKEGLKNVAAGANPMILKRGIEKAVQKLVEEIKELSKPVEGKEAVSQVAAISAGNDEEVGKLIAEAMEKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.829e-49
Identity = 102/171 (59.65%), Postives = 134/171 (78.36%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            A K + F +D  A + L+ GVN LAD V VTLGPKGRNVVLE K+G+P+I+NDGV++A+E+EL DPVEN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+++ +GIEK     V E+K ++K VE SE +A VAA+SA N+ E+G +IAEAM KVG
Sbjct:    2 AGKQILFRED--ARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIAREIELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKGIEKAVAKAVEEIKAIAKPVETSEAIAQVAAISA-NDEEIGKLIAEAMEKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.829e-49
Identity = 99/170 (58.24%), Postives = 138/170 (81.18%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKV 761
            AAK + F+++  A + L+ GVNKLAD V VTLGPKGRNVVLE K+G+P+IVNDGVT+AKE+ELEDP EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ +GI+K    +V E+++MSK+V   E +  VA++SAG+  E+G ++A+AM KV
Sbjct:    2 AAKMILFDEE--ARRALERGVNKLADTVKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRKGIQKAVDVVVEEIRKMSKKVRGKEDITYVASISAGDE-EIGKLVADAMEKV 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_DESRM (60 kDa chaperonin OS=Desulfotomaculum reducens (strain MI-1) GN=groL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.389e-49
Identity = 103/170 (60.59%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK++ F +D  A + L+ GVN LA+ V VTLGPKGRNVV+E K+GAP I NDGVT+A+E+ELED  EN+GA+LV++ A KTND+AGDGTTT+ VLAQ L+ EG+K VAAGANP++I RGIEK  +  V E+K M+K +E  E +A VA VSA N+  +GN+IAEAM KVG
Sbjct:    2 AKEIIFRED--ARRALERGVNALAEAVKVTLGPKGRNVVIEKKFGAPTITNDGVTIAREIELEDNFENMGAQLVKEVATKTNDVAGDGTTTATVLAQALVREGLKNVAAGANPMIIKRGIEKAVEKAVEEIKAMAKPIESKEAIAQVATVSA-NDDSIGNLIAEAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.389e-49
Identity = 100/170 (58.82%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV  +K+ ++ VEDS+ +A V ++SAGN+ EVG MIAEAM KVG
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVGQMIAEAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.389e-49
Identity = 100/170 (58.82%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV  +K+ ++ VEDS+ +A V ++SAGN+ EVG MIAEAM KVG
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVGQMIAEAMDKVG 169          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_TRIEI1.072e-4958.8260 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH601_THEVL1.072e-4958.8260 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH60_METVS1.401e-4958.2460 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_HELMI1.401e-4960.0060 kDa chaperonin OS=Heliobacterium modesticaldum ... [more]
CH60_HALOH1.829e-4959.4160 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_CARHZ1.829e-4959.6560 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_ANATD1.829e-4958.2460 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH60_DESRM2.389e-4960.5960 kDa chaperonin OS=Desulfotomaculum reducens (st... [more]
CH601_ANAVT2.389e-4958.8260 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP2.389e-4958.8260 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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