CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:13..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.951e-49
Identity = 104/170 (61.18%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK++ F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG
Sbjct:    2 AKEIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADE-EVGQLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.079e-49
Identity = 98/162 (60.49%), Postives = 128/162 (79.01%), Query Frame = 3
Query:  282 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            D  A   L  G++ +AD V +TLGPKGRNVVLE K+GAP I NDGVT+AKE++LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K V AGANP+ + RGIEK  + +V ELK+++K VE   ++A VAA+SA N+ E+GN+IAEAM KVG
Sbjct:    9 DMQARTALIRGLDIVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVRRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAISANNDTEIGNLIAEAMDKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_GEOKA (60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.186e-48
Identity = 104/170 (61.18%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG
Sbjct:    2 AKQIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADE-EVGQLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACP3 (60 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.186e-48
Identity = 104/170 (61.18%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+SA +  EVG +IAEAM +VG
Sbjct:    2 AKQIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAADE-EVGQLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.549e-48
Identity = 98/171 (57.31%), Postives = 129/171 (75.44%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMS-KEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK+LHFN D  A   L+ GV++LA+ V VTLGPKGRNVV++ K+GAP +  DGVTVAKE+EL DP+EN+GA++V++ A KT+DLAGDGTTT+ VLAQ +  EG+K V AG+NP+ + RGIEK    +V ELK++S       E+A V  +SA N+ E+GN+IAEAM KVG
Sbjct:    2 AAKELHFNVDARAA--LKRGVDQLAEAVKVTLGPKGRNVVIDKKFGAPTVTKDGVTVAKEIELADPIENMGAQMVKEVATKTSDLAGDGTTTATVLAQAIFREGLKNVTAGSNPMALKRGIEKAVAGIVEELKRISVPTTGKKEIAQVGTISANNDPEIGNLIAEAMEKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 192.971 bits (489), Expect = 1.549e-48
Identity = 97/170 (57.06%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N +  A + L+ G++ LA+ V VTLGPKGRNVVLE K+G+P+I+NDG+T+AKE+ELED VEN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K +  LV+ +K+ ++ V DS+ +A V A+SAGN+ EVG MIA AM KVG
Sbjct:    2 AKSIIYNDE--ARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEIELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGIDKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LACDB (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=groL PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.023e-48
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F++D  A + L NGVNKLA+ V  TLGPKGRNVVLE  YGAP I NDGVT+AK +ELED  ENIGAKLV +AA+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V +L + S +V    ++A VA++S+ +  E+G++IAEAM KVG
Sbjct:    2 AKDIKFSED--ARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKNVVAGANPVGIRRGIEKATKAAVDQLHKNSHKVSSRDQIAQVASISSASK-EIGDLIAEAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LACDA (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=groL PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.023e-48
Identity = 103/170 (60.59%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F++D  A + L NGVNKLA+ V  TLGPKGRNVVLE  YGAP I NDGVT+AK +ELED  ENIGAKLV +AA+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V +L + S +V    ++A VA++S+ +  E+G++IAEAM KVG
Sbjct:    2 AKDIKFSED--ARRSLLNGVNKLANTVKTTLGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHYENIGAKLVAEAASKTNDIAGDGTTTATVLTQAIVQEGMKNVVAGANPVGIRRGIEKATKAAVDQLHKNSHKVSSRDQIAQVASISSASK-EIGDLIAEAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.023e-48
Identity = 100/170 (58.82%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F++D  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANP++I +GIEK ++  V EL ++SK +E  + +A VAA+S+ ++ EVG +IAEAM +VG
Sbjct:    2 AKDIKFSED--ARRSMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVTSGANPMVIRKGIEKATQVAVEELSKISKPIEGKDSIAQVAAISSADD-EVGKIIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 192.586 bits (488), Expect = 2.023e-48
Identity = 93/155 (60.00%), Postives = 125/155 (80.65%), Query Frame = 3
Query:  297 KKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKV 761
            + L+ G+N LAD V +TLGPKGRNV+LE +YGAP+IVNDG+TVAKE+EL +P EN GAKL+++ A+KT ++AGDGTTT+ ++AQ L+ EG++ VAAGANPV + RGIEK +  LV E++ ++K VE S +A VA VS+GN+ EVG MIA+AM KV
Sbjct:   13 RSLEAGINALADAVRITLGPKGRNVLLEKQYGAPQIVNDGITVAKEIELSNPEENAGAKLIQEVASKTKEIAGDGTTTATIIAQALVREGLRNVAAGANPVALRRGIEKVTTFLVQEIEAVAKPVEGSAIAQVATVSSGNDPEVGAMIADAMDKV 167          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GEOTN6.951e-4961.1860 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_DICT69.079e-4960.4960 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_GEOKA1.186e-4861.1860 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH60_BACP31.186e-4861.1860 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=... [more]
CH60_GEMAT1.549e-4857.3160 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH601_SYNY31.549e-4857.0660 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_LACDB2.023e-4860.5960 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_LACDA2.023e-4860.5960 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_BACHD2.023e-4858.8260 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH602_SYNY32.023e-4860.0060 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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