CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:13..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_PYRSA (60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 90/156 (57.69%), Postives = 123/156 (78.85%), Query Frame = 3
Query:  303 LQNGVNKLADLVGVTLGPKGRNVVLES-KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            L+ G++ LA+ V VTLGPKGRNVVLES KYG P+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ +G+K V   +  + I RGIEK ++ ++S++ + S+ VED++ +  VAA+SAGN+ EVG MIA+A+ KVG
Sbjct:   41 LERGMDILAEAVSVTLGPKGRNVVLESGKYGPPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAMVKQGMKNVRCRSKSIAIKRGIEKATQFVISQIAEYSRPVEDTKSITQVAAISAGNDMEVGQMIADAIEKVG 196          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_PSEST (60 kDa chaperonin OS=Pseudomonas stutzeri GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 94/171 (54.97%), Postives = 126/171 (73.68%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNVVLE  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK ++K   DS+ +A V  +SA ++  +G++IAEAM +VG
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELKDRFENMGAQLVKDVASKANDEAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATIAIVAELKNLAKPCTDSKAIAQVGTISANSDSSIGDIIAEAMERVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_POLSJ (60 kDa chaperonin OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 93/171 (54.39%), Postives = 128/171 (74.85%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAKD+ F   G A  ++  GVN LA+ V VTLGPKGRNVVLE  +GAP +  DGV+VAKE+EL+D ++N+GA++V++ A+KT+D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   ALV ELK+ SK    S E+A V ++SA ++  +G +IA+AM KVG
Sbjct:    2 AAKDVIFG--GEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSISANSDEAIGKIIADAMDKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_HAES2 (60 kDa chaperonin OS=Haemophilus somnus (strain 2336) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F  D  A  K+  GVN LAD V VTLGPKGRNV+L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +++EG+K VAAG NP+ + RGI+K   A+V ELK +SK  E S E+  V  +SA  +  VG +IA+AM KVG
Sbjct:    3 AKDVKFGND--ARVKMLAGVNVLADAVKVTLGPKGRNVILDKAFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVSEGLKAVAAGMNPMDLKRGIDKAVNAVVEELKILSKPCETSKEIEQVGTISANADETVGKLIAQAMEKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_HAES1 (60 kDa chaperonin OS=Haemophilus somnus (strain 129Pt) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F  D  A  K+  GVN LAD V VTLGPKGRNV+L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ +++EG+K VAAG NP+ + RGI+K   A+V ELK +SK  E S E+  V  +SA  +  VG +IA+AM KVG
Sbjct:    3 AKDVKFGND--ARVKMLAGVNVLADAVKVTLGPKGRNVILDKAFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVSEGLKAVAAGMNPMDLKRGIDKAVNAVVEELKILSKPCETSKEIEQVGTISANADETVGKLIAQAMEKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_EDWI9 (60 kDa chaperonin OS=Edwardsiella ictaluri (strain 93-146) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 95/171 (55.56%), Postives = 122/171 (71.35%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +G+P I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S    DS+ +A V  +SA  +  VG +IAEAM KVG
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGSPAITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVSAAVEELKALSVPCSDSKAIAQVGTISANADDTVGQLIAEAMEKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BUCTT (60 kDa chaperonin OS=Buchnera aphidicola subsp. Tuberolachnus salignus GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 94/171 (54.97%), Postives = 123/171 (71.93%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK++ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+G ++V++ A+K ND AGDGTTT+ VLAQ +I EG+K VAAG NP+ + RGI+K   A V EL+++S    DS+ +A V  +SA ++  VG +IAEAM KVG
Sbjct:    2 AAKEVKFGNDARA--KMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGTQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELRKLSVPCSDSKAIAQVGTISANSDLTVGKLIAEAMGKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BRUSU (60 kDa chaperonin OS=Brucella suis GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAKD+ F +   A +K+  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKEVELED  EN+GA+++R+ A+KTND AGDGTTT+ VL Q ++ EG K VAAG NP+ + RGI+     +V+EL + +K++  S E+A V  +SA    E+G MIAEAM KVG
Sbjct:    2 AAKDVKFGRT--AREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BRUSI (60 kDa chaperonin OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAKD+ F +   A +K+  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKEVELED  EN+GA+++R+ A+KTND AGDGTTT+ VL Q ++ EG K VAAG NP+ + RGI+     +V+EL + +K++  S E+A V  +SA    E+G MIAEAM KVG
Sbjct:    2 AAKDVKFGRT--AREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BRUC2 (60 kDa chaperonin OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=groL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAKD+ F +   A +K+  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKEVELED  EN+GA+++R+ A+KTND AGDGTTT+ VL Q ++ EG K VAAG NP+ + RGI+     +V+EL + +K++  S E+A V  +SA    E+G MIAEAM KVG
Sbjct:    2 AAKDVKFGRT--AREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEVELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVNEVVAELLKKAKKINTSEEVAQVGTISANGEAEIGKMIAEAMQKVG 170          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PYRSA3.947e-4457.6960 kDa chaperonin, chloroplastic OS=Pyrenomonas sa... [more]
CH60_PSEST3.947e-4454.9760 kDa chaperonin OS=Pseudomonas stutzeri GN=groL ... [more]
CH60_POLSJ3.947e-4454.3960 kDa chaperonin OS=Polaromonas sp. (strain JS666... [more]
CH60_HAES23.947e-4455.2960 kDa chaperonin OS=Haemophilus somnus (strain 23... [more]
CH60_HAES13.947e-4455.2960 kDa chaperonin OS=Haemophilus somnus (strain 12... [more]
CH60_EDWI93.947e-4455.5660 kDa chaperonin OS=Edwardsiella ictaluri (strain... [more]
CH60_BUCTT3.947e-4454.9760 kDa chaperonin OS=Buchnera aphidicola subsp. Tu... [more]
CH60_BRUSU3.947e-4454.3960 kDa chaperonin OS=Brucella suis GN=groL PE=3 SV... [more]
CH60_BRUSI3.947e-4454.3960 kDa chaperonin OS=Brucella suis (strain ATCC 23... [more]
CH60_BRUC23.947e-4454.3960 kDa chaperonin OS=Brucella canis (strain ATCC 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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