CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:13..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.921e-47
Identity = 98/170 (57.65%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK  +++V ++K  +K +E  E +A VA++SAG++  +G +I++AM KVG
Sbjct:    2 AKQIVFNEE--ARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVDDIKTNAKPIESKESIAQVASISAGDD-NIGVLISDAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.921e-47
Identity = 98/170 (57.65%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK  +++V ++K  +K +E  E +A VA++SAG++  +G +I++AM KVG
Sbjct:    2 AKQIVFNEE--ARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVEDIKTNAKPIESKESIAQVASISAGDD-NIGVLISDAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 98/169 (57.99%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  261 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            K L FN++  A + L+ GV+K+A+ V VTLGPKGRNVV+E  +G+P I NDGV++AKE+ELED  EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+L+ RGI+K  +  V E+K++SK++   E +A VAA+SA N+ E+G +IAEAM KVG
Sbjct:    3 KILKFNEE--ARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 98/169 (57.99%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  261 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            K L FN++  A + L+ GV+K+A+ V VTLGPKGRNVV+E  +G+P I NDGV++AKE+ELED  EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+L+ RGI+K  +  V E+K++SK++   E +A VAA+SA N+ E+G +IAEAM KVG
Sbjct:    3 KILKFNEE--ARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 98/169 (57.99%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  261 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            K L FN++  A + L+ GV+K+A+ V VTLGPKGRNVV+E  +G+P I NDGV++AKE+ELED  EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+L+ RGI+K  +  V E+K++SK++   E +A VAA+SA N+ E+G +IAEAM KVG
Sbjct:    3 KILKFNEE--ARRALERGVDKVANAVKVTLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVEKAVEEIKKVSKKLSGREDIAHVAAISA-NSAEIGELIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 95/170 (55.88%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + F  D  A +KLQ GV+ LA+ V VTLGP+GRNVVL+ K+GAP + NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTTS VLAQ ++ EG+K V  GANP+++ RGIEK  +  V EL++ +  VE ++ +A+VAA+SA N+ E+G ++A+AM  VG
Sbjct:    3 AKQIIF--DEAARRKLQAGVDALANTVKVTLGPRGRNVVLDKKFGAPAVANDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTSTVLAQAIVKEGLKNVTGGANPMILKRGIEKAVQVAVEELRKQAIPVETNKAIAEVAAISANNDREIGELVAKAMDTVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_OCEIH (60 kDa chaperonin OS=Oceanobacillus iheyensis GN=groL PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 101/170 (59.41%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKDL F++D  A + +  GV+ LAD V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELED  EN+GA+LV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANPV I RGIEK  +  V ELK +S+ +E  E ++ +AAVS+G+  EVG +IAEAM +VG
Sbjct:    2 AKDLKFSED--ARRAMLRGVDTLADAVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEDAFENMGAQLVSEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTSGANPVGIRRGIEKAVELAVQELKGISQPIESKEAISQIAAVSSGDE-EVGQLIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_CYAPA (60 kDa chaperonin, cyanelle OS=Cyanophora paradoxa GN=groL-A PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 94/159 (59.12%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  291 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGANP+ I RGI++ ++ +V  +   +K VEDS  +  VA++SAGN+ EVG MIA+A+ KVG
Sbjct:   11 ARRALEKGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAMVKEGMRNVAAGANPMAIKRGIDRATQKVVETIAAHAKPVEDSRAITQVASISAGNDDEVGKMIADAIEKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.814e-47
Identity = 95/170 (55.88%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LV+E+K  +  + DS  +A V  +SAGN+ EVG MIA+AM KVG
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVAEIKDKANPISDSNAIAQVGTISAGNDEEVGRMIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LEUMM (60 kDa chaperonin OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.982e-47
Identity = 101/170 (59.41%), Postives = 127/170 (74.71%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK+L F++D  A  K++ GV+KLAD V  T+GPKGRNVVLE  YGAP I NDGVT+AK +ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I  GIEK + A V++L +MS  V    E+A +A++SA N  EVG +IAEAM KVG
Sbjct:    2 AKELKFSEDARA--KMKAGVDKLADTVKTTIGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHFENMGAKLVAEVASKTNDIAGDGTTTATVLTQAIVGEGLKNVTAGANPVGIRTGIEKATAAAVAKLHEMSHTVNTKDEIAQIASISAANE-EVGELIAEAMDKVG 168          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESHY2.921e-4757.6560 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_DESHD2.921e-4757.6560 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_THESQ3.814e-4757.9960 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP13.814e-4757.9960 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA3.814e-4757.9960 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_SYMTH3.814e-4755.8860 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_OCEIH3.814e-4759.4160 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH60_CYAPA3.814e-4759.1260 kDa chaperonin, cyanelle OS=Cyanophora paradoxa... [more]
CH602_SYNPW3.814e-4755.8860 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH60_LEUMM4.982e-4759.4160 kDa chaperonin OS=Leuconostoc mesenteroides sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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