CX671838

Overview
NameCX671838
Unique NameCX671838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:13..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LEPBL (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.982e-47
Identity = 93/170 (54.71%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ +N+   A +KL  GVNKLA+ V VTLGPKGRNVV++ K+GAP I  DGVTVAKE+ELED +EN+GA++V++ + KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ + RGI+K   A V  +++ + ++E+  ++A+VA++SA N+  +GN+IA+AM KVG
Sbjct:    2 AKDIEYNET--ARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDALENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKRGIDKAVTAAVESIRKRAVKIENKKDIANVASISANNDDTIGNLIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_LEPBJ (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.982e-47
Identity = 93/170 (54.71%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ +N+   A +KL  GVNKLA+ V VTLGPKGRNVV++ K+GAP I  DGVTVAKE+ELED +EN+GA++V++ + KTND+AGDGTTT+ +LAQ +I EG+K V AGANP+ + RGI+K   A V  +++ + ++E+  ++A+VA++SA N+  +GN+IA+AM KVG
Sbjct:    2 AKDIEYNET--ARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDALENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKRGIDKAVTAAVESIRKRAVKIENKKDIANVASISANNDDTIGNLIADAMDKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH601_PSYIN (60 kDa chaperonin 1 OS=Psychromonas ingrahamii (strain 37) GN=groL1 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.982e-47
Identity = 94/170 (55.29%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            +K++ F  D  +  K+ NGVN LAD V +TLGPKGRNVV++  YGAP+I  DGVTVAKE+ELED  EN+GA++V+  A++TND AGDGTTT+ VLAQ +IA+G+K VAAG NP+ + RGI++T KA V+ELK++S    DS+ +  V  +SA +++E+G +IA+AM KVG
Sbjct:    2 SKEIKFGND--SRSKMLNGVNILADAVKITLGPKGRNVVIDKSYGAPQITKDGVTVAKEIELEDKFENMGAQMVKDVASQTNDAAGDGTTTATVLAQAIIADGLKAVAAGMNPMDLKRGIDQTVKAAVAELKKLSTPCSDSKAITQVGTISANSDHEIGEIIAQAMQKVG 169          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.506e-47
Identity = 97/169 (57.40%), Postives = 134/169 (79.29%), Query Frame = 3
Query:  261 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            K L FN++  A + L+ GV+K+A+ V +TLGPKGRNVV+E  +G+P I NDGV++AKE+ELED  EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+L+ RGI+K  +  V E+K++SK++   E +A VAA+SA N+ E+G +IAEAM KVG
Sbjct:    3 KLLKFNEE--ARRALERGVDKVANAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGLKNVAAGANPILLKRGIDKAVERAVEEIKKLSKKLSGREDIAHVAAISA-NSPEIGELIAEAMDKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.506e-47
Identity = 95/170 (55.88%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F +D  A  +L+ GVNKLAD + VTLGPKGRNVVL+ K+G+P+I NDGVT+A++++LED  EN+GA+LV++ A +TND+AGDGTTT+ +LAQ ++ EG+K V AGANP++I +GI+K     V EL++ +  VED E ++ VA++SA N+ EVG +IAEAM KVG
Sbjct:    2 AKDIKFREDARA--RLEQGVNKLADTLKVTLGPKGRNVVLDKKFGSPQITNDGVTIARDIDLEDNYENMGAQLVKEVATQTNDVAGDGTTTATILAQAMVNEGIKNVTAGANPMIIRKGIQKAVDRAVEELQKNAVSVEDKESISQVASISA-NDEEVGKLIAEAMEKVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.506e-47
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANP+ I +GIEK + A V ELK +SK +E  E +A VAA+S+ +  EVG +IAEAM +VG
Sbjct:    2 AKDIQFSEE--ARRSMLKGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVTSGANPMGIRKGIEKATAAAVKELKAISKPIEGRESIAQVAAISSADE-EVGQIIAEAMERVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_DESMR (60 kDa chaperonin OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=groL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.497e-47
Identity = 95/171 (55.56%), Postives = 132/171 (77.19%), Query Frame = 3
Query:  255 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AAK++ F  D  A +KL+ GV+KLA+ V VTLGPKGRNVV+E  +G+P I  DGVTVAKE+ELED  EN+GA++V++ A+KT+D+AGDGTTT+ +LAQ +  EGVK+VAAG NP+ I RGI+K   ++V+EL+ ++K   D  E+A V  +SA ++  +GN+IAEAM+KVG
Sbjct:    2 AAKEILF--DSKAREKLKRGVDKLANAVKVTLGPKGRNVVIEKSFGSPIITKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIFTEGVKLVAAGRNPMAIKRGIDKAVASVVAELETLAKPTRDQKEIAQVGTISANSDATIGNIIAEAMNKVG 170          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_CLODI (60 kDa chaperonin OS=Clostridium difficile GN=groL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.497e-47
Identity = 98/170 (57.65%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK++ F+++    + L+ GVNKLAD V VTLGPKGRNV+L+ K+G+P I NDGVT+AKE+ELED  EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+L+ +GI+K     V ELK  S+ VE  E ++ VA++SAG+  EVG +IAEAM  VG
Sbjct:    2 AKEIKFSEE--TRRALEAGVNKLADTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAKEIELEDRFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPILLRKGIQKAVTVAVEELKNQSRIVETQEAISQVASISAGDE-EVGKLIAEAMEIVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_CLOD6 (60 kDa chaperonin OS=Clostridium difficile (strain 630) GN=groL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.497e-47
Identity = 98/170 (57.65%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AK++ F+++    + L+ GVNKLAD V VTLGPKGRNV+L+ K+G+P I NDGVT+AKE+ELED  EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+L+ +GI+K     V ELK  S+ VE  E ++ VA++SAG+  EVG +IAEAM  VG
Sbjct:    2 AKEIKFSEE--TRRALEAGVNKLADTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAKEIELEDRFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPILLRKGIQKAVTVAVEELKNQSRIVETQEAISQVASISAGDE-EVGKLIAEAMEIVG 168          
BLAST of CX671838 vs. ExPASy Swiss-Prot
Match: CH60_BACHK (60 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groL PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.497e-47
Identity = 101/170 (59.41%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  258 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVSAGNNYEVGNMIAEAMSKVG 764
            AKD+ F+++  A + +  GV+ LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A V ELK +SK +E  S +A VAA+SA +  EVG +IAEAM +VG
Sbjct:    2 AKDIKFSEE--ARRSMLRGVDTLANAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAISAADE-EVGQLIAEAMERVG 168          
The following BLAST results are available for this feature:
BLAST of CX671838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEPBL4.982e-4754.7160 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH60_LEPBJ4.982e-4754.7160 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH601_PSYIN4.982e-4755.2960 kDa chaperonin 1 OS=Psychromonas ingrahamii (st... [more]
CH60_THENE6.506e-4757.4060 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_NATTJ6.506e-4755.8860 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH60_BACSK6.506e-4758.8260 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH60_DESMR8.497e-4755.5660 kDa chaperonin OS=Desulfovibrio magneticus (str... [more]
CH60_CLODI8.497e-4757.6560 kDa chaperonin OS=Clostridium difficile GN=groL... [more]
CH60_CLOD68.497e-4757.6560 kDa chaperonin OS=Clostridium difficile (strain... [more]
CH60_BACHK8.497e-4759.4160 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671838 ID=CX671838; Name=CX671838; organism=Citrus sinensis; type=EST; length=764bp
TGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCG
TCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTC
CATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTG
CATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCA
TTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGAT
TTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAAGA
AACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTT
GGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCAAA
AATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACC
CGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACT
AATGACTTGGCTGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGG
GCTTATAGCTGAAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTC
TTATCACAAGAGGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTC
AAGCAGATGTCAAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGC
TGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCAGAAGCCA
TGAGTAAAGTGGGA
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