CX671837

Overview
NameCX671837
Unique NameCX671837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:269..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.681e-29
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            K+KKLR+EDA+NATKAA         G TL  L+  ++    +  + EE +GA+IV  AL  PL  IA+NAGVNG+VV+E V +   ++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASTLSGEELIGANIVAAALTAPLMRIAENAGVNGAVVAENVKAKSFNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.681e-29
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            K++KLR+EDALNAT+AA         G TLL LS  + A K  L N EE+VGADIV RAL  PL  IA NAG+ GSVV EKVL  +   +G++A TG Y D+ A GI+DP KVVR  L++A+S+A  +L ++ +VVE  +PEP    G
Sbjct:  389 KDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEKEM-PFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAAMYLTTEAIVVE--KPEPKTKTG 532          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            K +KLR+EDALNAT+AA         G TLL +S ++DA+   L+ D+ K G +IV+RAL  PL+ IA+NAG NG VV ++V +S     G+NA TGN+EDLM AGI+D +KVVR  L+ A S+A   + ++ VV +  +PEP  PAG   D  G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGSTLLHISAELDALTSGLEGDQ-KTGVEIVQRALSAPLRQIAENAGSNGDVVVDRVRNSGE---GFNALTGNFEDLMNAGILDASKVVRLALQDAVSIASLVVTTEVVVAD--KPEPPAPAGGGGDPMG 536          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 72/158 (45.57%), Postives = 100/158 (63.29%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            K+KKLR+EDA+NATKAA         G TL  L+  ++       + EE +GA+IV  AL  PL  IA+NAG NG+VV+E V S    + GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPSLEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRAISE-GYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28
Identity = 72/154 (46.75%), Postives = 98/154 (63.64%), Query Frame = -2
Query:  277 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 732
            KEKK RV+DAL+AT+AA         G  LLR    +D+IK    ND+++VG DIV+RA+  P++ IA+NAG  GS++  K+    +  YG+NA TG Y DL A G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PAMPAG  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDSIKTA--NDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPAMPAGAGMD 541          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = -2
Query:  292 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 732
            +++KLR+EDA NAT AA         G  L+ LS  V AIKE L++ +E++GADIV++AL  P  LIA+NAG+ G VV EK+ + +  + GYNA T  YE+L+ +G+IDP KV RC L++A+SVA   L +  +VVE  +P+ A+ A
Sbjct:  435 EDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGE-WEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAA 580          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 73/157 (46.50%), Postives = 100/157 (63.69%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            K++KLR+EDALNATKAA         G TLL L+ K+DAIK  L  D+EK GAD++ RAL  PL+ IA NAGV GSV+++KV   D    GY+A  G + D++AAG+ DP KVVR  L++A+S+A   L ++ ++V+  +PE         D  G G
Sbjct:  389 KDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLA-DDEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELD-FNIGYDAMKGEFVDMLAAGVADPAKVVRSALQNAASIAAMVLTTEVLIVD--KPEKKKAGAGAPDMGGMG 541          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.809e-28
Identity = 66/157 (42.04%), Postives = 103/157 (65.61%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KE+K RV+DAL+AT+AA         G  L R S  ++ +K   DND+++ G DI+++A+  P++ IA+NAG +G+V+S KVL +D++ +G++A +G ++D++ AGIIDPTKVVR  L+ A+SVA   + ++ +V E   PE   PAG      G G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGVALARASLAINKLKA--DNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASVAGLLITTEAMVAE--RPEKKAPAGGDAGMGGMG 542          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.809e-28
Identity = 70/151 (46.36%), Postives = 99/151 (65.56%), Query Frame = -2
Query:  280 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 732
            K+KKLR+EDA+NATKAA         G TL  L+  ++    T  + EE +GA+IV+ AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG  M
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEDWSSTNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 69/157 (43.95%), Postives = 103/157 (65.61%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KEKK RV+DA++AT+AA         G  LL     +D++K    N ++ VG +IV+RAL  P++ IA+NAGV+G+VV+ K+L + +  +GYNA TG YE+L+ AG+IDPTKVVR  L+ A+S+A   + ++ +V EI E + AMP+ +     G G
Sbjct:  390 KEKKDRVDDAMHATRAAVEEGVVAGGGVALLHAIRSLDSVKGA--NPDQNVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLENSDTDFGYNAQTGIYENLVTAGVIDPTKVVRAALQGAASIAGLLITTEAMVAEIPEKKDAMPSPDMGGMGGMG 544          
The following BLAST results are available for this feature:
BLAST of CX671837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNPW5.681e-2944.9460 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH601_SYNJA5.681e-2951.3560 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH601_SYNS31.653e-2847.7460 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_SYNPX1.653e-2845.5760 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH602_RHIEC2.159e-2846.7560 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
RUBA_PEA3.682e-2846.94RuBisCO large subunit-binding protein subunit alph... [more]
CH602_GLOVI3.682e-2846.5060 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH60_ACICJ4.809e-2842.0460 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH602_PROM14.809e-2846.3660 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_RHORT6.281e-2843.9560 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671837 ID=CX671837; Name=CX671837; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTGAGCAAAATAAAATTTCTTTCACTCAAAAAGTT
CAAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAAAATCCATAAACTCTACTAAGTCGAGTAAT
TGAATTTACAAGAAGAAAAAAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAAGTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAATATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCAACATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAATGGCATCCACCTTAAATGAAAGTCTCAGTAGAGTAC
ATCCGCCACCAACTACGATACCTTCCTCAACTGCAGCCTTTGTTGCATTA
AGAGCATCTTCGACTCTCAACTTCTTCTCTTTA
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