CX671837

Overview
NameCX671837
Unique NameCX671837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:269..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STRPB (60 kDa chaperonin OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 732
            KE KLR+EDALNAT+AA         G  L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  390 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 536          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STRP6 (60 kDa chaperonin OS=Streptococcus pyogenes serotype M6 GN=groL PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 732
            KE KLR+EDALNAT+AA         G  L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 534          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STRP3 (60 kDa chaperonin OS=Streptococcus pyogenes serotype M3 GN=groL PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 732
            KE KLR+EDALNAT+AA         G  L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 534          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STRP1 (60 kDa chaperonin OS=Streptococcus pyogenes serotype M1 GN=groL PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 732
            KE KLR+EDALNAT+AA         G  L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPATPAPAMPAG 534          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  307 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 732
            KE+KLR+EDALN+T+AA         G  L+ +  KV  IK   D +    G +IV +AL  P++ IA+NAG+ GS++ E++  ++    G+NAAT  + +++  GI+DPTKV R  L+HA+SVA  FL ++ VV  I EPE
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIKAEGDVE---TGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAG-VGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEPE 525          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  307 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 732
            KE+KLR+EDALN+T+AA         G  L+ +  KV  IK   D +    G +IV +AL  P++ IA+NAG+ GS++ E++  ++    G+NAAT  + +++  GI+DPTKV R  L+HA+SVA  FL ++ VV  I EPE
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIKAEGDVE---TGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAG-VGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEPE 525          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_STAEP (60 kDa chaperonin OS=Staphylococcus epidermidis GN=groL PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = -2
Query:  307 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 732
            KE+KLR+EDALN+T+AA         G  L+ +  KV  IK   D +    G +IV +AL  P++ IA+NAG+ GS++ E++  ++    G+NAAT  + +++  GI+DPTKV R  L+HA+SVA  FL ++ VV  I EPE
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIKAEGDVE---TGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAG-VGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEPE 525          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_METPP (60 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 66/148 (44.59%), Postives = 87/148 (58.78%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            KEKK RVEDAL+AT+AA         G  LLR      AIK   DN ++  G  ++ RA+  PL++I  NAG   SVV   VL+   + YGYNAA G Y D++  GI+DPTKV R  L++A+SVA   L ++ +V E   P+   PAG
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQAAGAIKG--DNADQDAGIKLILRAIEEPLRIIVTNAGDEASVVVNAVLAGKGN-YGYNAANGTYGDMIEMGILDPTKVTRTALQNAASVAALMLTTEAMVAE--SPKDDAPAG 532          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_LACF3 (60 kDa chaperonin OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 62/146 (42.47%), Postives = 89/146 (60.96%), Query Frame = -2
Query:  295 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 732
            KEKK R+EDALNAT+AA         G  L+ +   +D ++ +   DE   G  IVK AL  P++ IA+NAG+ GSV+  + L  +    GYNAA   +ED++AAGI+DPTKV R  L++A+SV+   L ++ VV +  +P  A P
Sbjct:  388 KEKKYRIEDALNATRAAVQEGFVPGGGTALVNVIPALDEVEASATGDEA-TGIKIVKAALEAPVRQIAENAGLEGSVIVNQ-LKQEKPGVGYNAADDKFEDMVAAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPQPADAAP 531          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_JANSC (60 kDa chaperonin OS=Jannaschia sp. (strain CCS1) GN=groL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 63/155 (40.65%), Postives = 95/155 (61.29%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            KE+K RV+DALNAT+AA         G  L++    +  ++   +N ++  G  IV+RAL  PL+ IA+N+GV+GSVV+ K+  SD++ +G+NA T  Y DL   G+IDP KVVR  L+ A+SVA   + ++ +V + K  +   PAG  M + G
Sbjct:  389 KERKDRVDDALNATRAAVQEGIVVGGGVALVQGGKSLAGLEG--ENADQNAGIAIVRRALEAPLRQIAENSGVDGSVVAGKIRESDDNAFGFNAQTEEYGDLFKFGVIDPAKVVRTALQDAASVAGLLITTEAMVAD-KPAKEGAPAGGGMPDMG 540          
The following BLAST results are available for this feature:
BLAST of CX671837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STRPB1.770e-2246.3660 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRP61.770e-2246.3660 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRP31.770e-2246.3660 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRP11.770e-2246.3660 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STAES1.770e-2242.9660 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ1.770e-2242.9660 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEP1.770e-2242.9660 kDa chaperonin OS=Staphylococcus epidermidis GN... [more]
CH60_METPP1.770e-2244.5960 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH60_LACF31.770e-2242.4760 kDa chaperonin OS=Lactobacillus fermentum (stra... [more]
CH60_JANSC1.770e-2240.6560 kDa chaperonin OS=Jannaschia sp. (strain CCS1) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671837 ID=CX671837; Name=CX671837; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTGAGCAAAATAAAATTTCTTTCACTCAAAAAGTT
CAAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAAAATCCATAAACTCTACTAAGTCGAGTAAT
TGAATTTACAAGAAGAAAAAAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAAGTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAATATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCAACATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAATGGCATCCACCTTAAATGAAAGTCTCAGTAGAGTAC
ATCCGCCACCAACTACGATACCTTCCTCAACTGCAGCCTTTGTTGCATTA
AGAGCATCTTCGACTCTCAACTTCTTCTCTTTA
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