CX671837

Overview
NameCX671837
Unique NameCX671837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:269..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.827e-27
Identity = 70/158 (44.30%), Postives = 97/158 (61.39%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            K+KKLR+EDA+NATKAA         G TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+ A PAG       + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDAAPAGAGAGGGDFDY 544          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KEKK RV+DAL+AT+AA         G  L+R    ++ +K  +DN ++  G  IVKR+L  PL+ I  NAG  GSV+  KV    N ++GY+A  G Y+++++ GIIDPTKV R  LE+A+SV+   L ++CV+ EIK+ EPAMP    M NSG G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALVRAIKSLNGLK--VDNVDQDTGIKIVKRSLQEPLRQIVANAGEEGSVIVAKVAEGKN-EFGYDAKLGEYKNMISEGIIDPTKVTRVALENAASVSGMLLTTECVITEIKKEEPAMP---QMPNSGMG 540          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            KEKK RVEDAL+AT+AA         G  LL+    V  + + LD DE + GA IV RAL  P++ IA+NAG +GS+V +KV +  +   G+NA TG YEDL+AAG+IDP  V R  L++A+S+A   + +D VV E +E +PAMP G
Sbjct:  389 KEKKHRVEDALSATRAALEEGIVPGGGVALLKAQKAVGELLDELDGDE-RTGARIVYRALEEPIRQIAENAGADGSIVVDKVRAQGD-SIGFNALTGGYEDLVAAGVIDPAMVTRSALQNAASIAGLLVTTDVVVAEPEEEQPAMPGG 534          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 69/157 (43.95%), Postives = 96/157 (61.15%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KE+K RV+DALNAT+AA         G  LLR S  +D +     ND+EK G DIV++AL  P++ IA+NAGV GSVV   +L++ +  YG+NA T  Y DL+A G+IDP KVVR  L++A+S+A   + ++  + E  + E A   G P    G G
Sbjct:  390 KERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVVGL---NDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEAGIAEAPKKESAGGGGMPGGMGGMG 543          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 69/149 (46.31%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 732
            KEKK R++DALNAT+AA         G  LLR S K+ A      ND+++ G +IV+RAL  P + IA+NAG   S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKISAKGV---NDDQEAGINIVRRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 69/148 (46.62%), Postives = 97/148 (65.54%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            K+KKLR+EDA+NATKAA         G TL  L+  +     +  + EE +GA+IV+ +L  PL  IA+NAG NG+VV+E V S      GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLAADLQKWANSNLSGEELIGANIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAG 534          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 72/161 (44.72%), Postives = 99/161 (61.49%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE----PAMPAGNPMDNSGYG 732
            KEKK RVEDALNAT+AA         G  L+R    +DA+ +     E+K+GA +V RAL  PL++IA NAG+ GSVV +KV +++   +GYNA T  YEDL+ AG+IDPTKVVR  L++A S+A   L ++ ++ +  +      PAMP G      G G
Sbjct:  389 KEKKARVEDALNATRAAVEEGIVPGGGVALVRA---IDAVAKAKITGEQKIGARVVMRALEAPLRMIANNAGMEGSVVLDKVKNTEG-SFGYNADTDTYEDLIEAGVIDPTKVVRLALQNACSIAGLMLTTEAMIADKPDENAGGMPAMPGGGMGGMGGMG 545          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 75/155 (48.39%), Postives = 97/155 (62.58%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            KEKK RV+DALNATKAA         G  L++   +V+    +L  DE  +GA+IVKRAL  PL+ IA+NAG +  VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  389 KEKKDRVDDALNATKAAVEEGIVVGGGAALIKAGNRVNL---SLKGDE-LIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            KEKK RV+DAL+AT+AA         G   +R    ++  K    N++E  G +IVKRA+  PL+ I +NAG  G+V++++V   +   +GYNA TG YEDL  AG+IDPTKV R  LE+A+S+A   L ++CV+ E+KE  PA PA  PM   G
Sbjct:  390 KEKKDRVDDALSATRAAIEEGTVPGGGVAYVRAISILEGFKGI--NEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRV-KEEKDDFGYNARTGIYEDLYVAGVIDPTKVARVALENAASIAGMLLTTECVITEVKEENPA-PAMPPMGGGG 540          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 67/148 (45.27%), Postives = 99/148 (66.89%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            KE+KLR+EDALNAT+A          G +L+ +   V+A+ ET + DE + G  I++RAL  PL+ IA NAG+ GSV+ EKV+SS+    G++A T  Y +++ AGI+DPTKV R  L++A+SV+   L ++  +V+IK  EP+MP G
Sbjct:  388 KERKLRIEDALNATRAGVEEGMVAGGGASLVHVIPAVEALLETTEGDE-RTGVKIIRRALEEPLRQIAANAGLEGSVIVEKVMSSEKG-IGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTEGAIVDIKSDEPSMPGG 533          
The following BLAST results are available for this feature:
BLAST of CX671837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_ANAVT1.827e-2744.3060 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH60_SULMW2.387e-2745.8660 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_RUBXD2.387e-2747.9760 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH60_HYPNA2.387e-2743.9560 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH601_RHIEC2.387e-2746.3160 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH601_PROM32.387e-2746.6260 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_DESAA3.117e-2744.7260 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH60_CAMFF3.117e-2748.3960 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_AZOPC3.117e-2745.1660 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]
CH60_ALKOO3.117e-2745.2760 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671837 ID=CX671837; Name=CX671837; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTGAGCAAAATAAAATTTCTTTCACTCAAAAAGTT
CAAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAAAATCCATAAACTCTACTAAGTCGAGTAAT
TGAATTTACAAGAAGAAAAAAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAAGTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAATATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCAACATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAATGGCATCCACCTTAAATGAAAGTCTCAGTAGAGTAC
ATCCGCCACCAACTACGATACCTTCCTCAACTGCAGCCTTTGTTGCATTA
AGAGCATCTTCGACTCTCAACTTCTTCTCTTTA
back to top