CX671837

Overview
NameCX671837
Unique NameCX671837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = -2
Query:  277 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 732
            KEKK RV+DAL+AT+AA         G  LLR    +D IK    ND+++VG +IV+RAL  P + IA+NAG  GSVV  K+    +  YG+NA TG + DL A G+IDP KVVR  L+ ASS+A   + ++ ++ E   K+  PAMPAG  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDNIKTA--NDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSIAGLLVTTEAMIAEKPKKDAPPAMPAGAGMD 541          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_SORC5 (60 kDa chaperonin 1 OS=Sorangium cellulosum (strain So ce56) GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 73/157 (46.50%), Postives = 99/157 (63.06%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KEKK RVEDAL+AT+AA         G  L R +  ++++K    NDE  VG  +V+RA+  PL+ IA+NAGV+G+VV+EKV S     +GYNAAT +YEDL+A G+IDP KVVR  + +A+SVA   L ++ +V E  + E A   G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVVGGGVALFRAAASLESLKF---NDERDVGVRLVRRAVEAPLRQIAQNAGVDGTVVAEKVRSGAP-TFGYNAATDSYEDLLAGGVIDPAKVVRHAISNAASVAALMLTTEALVAEKPKKEKAAAGGAPGGMGGMG 542          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.071e-27
Identity = 72/159 (45.28%), Postives = 100/159 (62.89%), Query Frame = -2
Query:  262 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLD--NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 732
            KE+K RV+DAL+AT+AA         G  LLR     +A    L   N +++VG +IV RAL  PL++IA NAG  GSVV  +V+ +    +G+NAATG YEDL+A+G+IDP KVVR  L+ A+SVA   + ++ +V E+ + EPAMP G+     G G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGVALLRAR---EASLTNLQGANHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMPGGDMGGMGGMG 545          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.071e-27
Identity = 72/161 (44.72%), Postives = 102/161 (63.35%), Query Frame = -2
Query:  259 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLD---NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 732
            K+KKLR+EDA+NATKAA         G TL  L+     +KE  D   + EE +GA+IV+ +L  PL  IA+NAG NG+V++E V S   +  G+NAATG+Y D+ AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG P     + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PILKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGAPGMGGDFDY 544          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.071e-27
Identity = 66/146 (45.21%), Postives = 98/146 (67.12%), Query Frame = -2
Query:  295 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 732
            KE+K RV+DALNAT+AA         G  L R +  V  ++    ND++++G DIV++AL  PL+ IA+NAG +G+VV+ KVL +  + +G++A  G ++DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E  EP+PA P
Sbjct:  390 KERKDRVDDALNATRAAVEEGIVPGGGTALARAAEVVARLQ--FHNDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.071e-27
Identity = 69/148 (46.62%), Postives = 100/148 (67.57%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            K++KLR+EDA+NATKAA         G  LL L+  +    ++L   EEK+GA I+++AL  PL+ IA+NAG+ GSV++EKV + +   +G+NA T  YEDL+AAGIIDP KV R  L++A+S+A   L ++C+VV+ K  +   PAG
Sbjct:  388 KDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSLSG-EEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLE-FNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECIVVD-KPEDDKTPAG 532          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 71/150 (47.33%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  295 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV----EIKEPEPAMP 732
            KEKK R+EDAL+AT+AA         G TL+R    V+ + + LD DE KVGA IV +AL  P++ IA+NAG +G+V+ EK+L+S    YG++A  G Y D+  AGIIDP KV R  L++A+S+A   L ++ +VV    E KE  PAMP
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGDE-KVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKEAAPAMP 536          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 73/154 (47.40%), Postives = 98/154 (63.64%), Query Frame = -2
Query:  280 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 732
            K+KKLR+EDA+NATKAA         G TL  L+  +        + EE +GA+IV +AL  PLK IA+NAG NGSVV+E V     HK    G+NAA+  Y D++AAGIIDP KV R  L++A+S+A   L ++C+VV++ E + A PAG  M
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALTEWANQNLSGEELIGANIVAQALDAPLKRIAENAGANGSVVAENV----RHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 732
            KEKK RVEDALNAT+AA         G  L+R    +D +K    +D+E  G  I++RA+  PL+ IA NAG  GS++ EKV    +  +G+NAATG +EDL+AAG+IDP KV R  L++A+SVA   L ++C + E  KE  PA PA   M   G
Sbjct:  390 KEKKDRVEDALNATRAAVEEGIVPGGGTALVRCCKVLDDVKPA--DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKVKEGKD-AFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLD-NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            KEKK RV+DAL+AT+AA         G  L++ S KV+     LD   +E++GADIV RA+  PLK IA NAG +  VV+ +V  S N   G+NAATG Y D+  AGI+DP KV R  +++A SVA   L ++  V +IKE +PAMP+   M   G
Sbjct:  389 KEKKDRVDDALSATRAAVEEGIVIGGGAALIKASKKVN-----LDLTGDERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539          
The following BLAST results are available for this feature:
BLAST of CX671837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH604_RHIEC3.117e-2746.7560 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH601_SORC53.117e-2746.5060 kDa chaperonin 1 OS=Sorangium cellulosum (strai... [more]
CH60_MAGSM4.071e-2745.2860 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH602_PROMP4.071e-2744.7260 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH602_GLUDA4.071e-2745.2160 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH601_GLOVI4.071e-2746.6260 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_THELT5.317e-2747.3360 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_SYNR35.317e-2747.4060 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_DESDG5.317e-2746.1560 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_ARCB45.317e-2746.1560 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671837 ID=CX671837; Name=CX671837; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTGAGCAAAATAAAATTTCTTTCACTCAAAAAGTT
CAAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAAAATCCATAAACTCTACTAAGTCGAGTAAT
TGAATTTACAAGAAGAAAAAAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAAGTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAATATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCAACATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAATGGCATCCACCTTAAATGAAAGTCTCAGTAGAGTAC
ATCCGCCACCAACTACGATACCTTCCTCAACTGCAGCCTTTGTTGCATTA
AGAGCATCTTCGACTCTCAACTTCTTCTCTTTA
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