CX671837

Overview
NameCX671837
Unique NameCX671837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 732
            K+KKLR+EDA+NATKAA         G TL  L+  +     +  + EE +G++IV+ +L  PL  IA+NAG NG+VV+E V S      GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLASDLQKWANSNLSGEELIGSNIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAG 534          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 72/155 (46.45%), Postives = 94/155 (60.65%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 732
            KEKK RVEDAL+AT+AA         G   LR    ++ +K +   + EK G DIV+RAL  PL+ IA N G   S+V  KV  S +  +G+NAATG+YEDL+ +G+IDPTKV R  L++ASSVA   L +  +V E  + E A PAG  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVAYLRAVKALEGVKVS---EGEKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAPAGGGMGGMG 541          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = -2
Query:  292 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 732
            +++KLR+EDA NAT AA         G TL+ LS  + AIKET ++ + ++GADIV++AL     LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  432 EDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVAQ-SLIAQNAGIEGEVVVEKIMFSE-WELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 574          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 69/143 (48.25%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  313 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 732
            KEKK RVEDA++ATKAA         G  L+R S  ++ +K   DN ++++G DI+K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SVA T L ++ ++ ++ E
Sbjct:  390 KEKKYRVEDAVHATKAAVEEGIVPGGGVALVRASEALEDLKG--DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPE 530          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 732
            KEKK R++DALNAT+AA         G  LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  D   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 732
            KEKK R++DALNAT+AA         G  LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  D   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 69/149 (46.31%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  292 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPA-MPA 732
            KE+K RV+DAL+AT+AA         G  LLR    +D +K    ND+++ G DIV+RAL  P + IA+NAG +G+ +  K+L  D++ +G+NAATG YEDL+ +G+IDP KVVR  L+ A+SVA   + ++ +V E+ KE  PA MPA
Sbjct:  390 KERKDRVDDALHATRAAVEEGILPGGGIALLRALKSLDGLKAA--NDDQQSGIDIVRRALRAPARQIAENAGEDGAYIVGKLLEGDDYNHGFNAATGEYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAELPKEDTPAPMPA 536          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.070e-27
Identity = 74/157 (47.13%), Postives = 94/157 (59.87%), Query Frame = -2
Query:  268 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 732
            KEKK RV+DAL+ATKAA         G   ++   KVD     L  DE  +GADIV+RAL  PL+ IA+NAG +  VV+  V  S +  YG+NAATG Y D+  AGIIDP KV R  L++A SVA   L ++  + E+KE  P PAMP  + M   G
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAAFIKAGAKVDL---NLSGDEA-IGADIVRRALTAPLRQIAENAGFDAGVVANSVSVSKDDNYGFNAATGEYVDMFKAGIIDPVKVERIALQNAVSVASLLLTTEATISELKEDKPMPAMPDMSGMGGMG 541          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.070e-27
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  295 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-----PAMP 732
            KEKK R+EDAL+AT+AA         G TLLR    V+ I E LD DE K+GA IV  AL  P+  IAKNAG +G+++  KVL  D+  YG++A  G Y D+   GIIDP KV R  L++A+S+A   L ++ +VVE  EP+     P MP
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGDE-KIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEPKNNNPMPEMP 537          
BLAST of CX671837 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.070e-27
Identity = 65/151 (43.05%), Postives = 99/151 (65.56%), Query Frame = -2
Query:  289 KEKKLRVEDALNATKAAXXXXXXXXXGCTLLRLSFKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI---KEPEPAMPAG 732
            KE+K RV+DA++AT+AA         G  LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ TG+Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+     P PAMP G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGDYGNLISKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKNSPAPAMPGG 538          
The following BLAST results are available for this feature:
BLAST of CX671837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROMM5.317e-2745.9560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_ANADF5.317e-2746.4560 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]
RUB2_BRANA6.944e-2746.94RuBisCO large subunit-binding protein subunit alph... [more]
CH60_AQUAE6.944e-2748.2560 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH605_SINMW6.944e-2745.6460 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]
CH601_SINMW6.944e-2745.6460 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH601_ERYLH6.944e-2746.3160 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH60_WOLRE9.070e-2747.1360 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_THEM49.070e-2747.0260 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH602_NITWN9.070e-2743.0560 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13D10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D10-G19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671837 ID=CX671837; Name=CX671837; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTGAGCAAAATAAAATTTCTTTCACTCAAAAAGTT
CAAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAAAATCCATAAACTCTACTAAGTCGAGTAAT
TGAATTTACAAGAAGAAAAAAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAAGTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAATATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCAACATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAATGGCATCCACCTTAAATGAAAGTCTCAGTAGAGTAC
ATCCGCCACCAACTACGATACCTTCCTCAACTGCAGCCTTTGTTGCATTA
AGAGCATCTTCGACTCTCAACTTCTTCTCTTTA
back to top