CX671830

Overview
NameCX671830
Unique NameCX671830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V V V+ GH+GVTILPLLSQ++   S +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+ GIE++ + G ++E+E    +     L   I  GV FV+
Sbjct:  169 VKVNVIGGHSGVTILPLLSQIE-GVSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHADFFAQPVLLGKNGIEQVLAYGEVSEFEANARDAMLDTLKADITLGVDFVK 311          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V++ V+ GH+GVTILPLLSQVK   S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  + LG+ G+E++   G ++ +E    +     L   I+ GV FV+
Sbjct:  169 VNINVIGGHSGVTILPLLSQVK-GVSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANVVECAYVDGGSEHAQFFAQPILLGKNGVEKVMPYGEVSAFEANARDAMLDTLNADIKLGVEFVK 311          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 73/144 (50.69%), Postives = 89/144 (61.81%), Query Frame = -1
Query:  265 DVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 696
            +VPV+ GH+GVTILPLLSQV    S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L G+  VIEC Y         FFA  VRLG+ G+EE   +G L+++E+  L      L   I  G  F+ K
Sbjct:  170 NVPVIGGHSGVTILPLLSQVA-GVSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLIRALNGEKDVIECTYTEGDGEHARFFAQPVRLGKNGVEEYLPIGQLSDFEKQSLNGMLDVLKKDIILGEEFINK 312          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V+VPV+ GHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   VIEC++V S  TE  +F++ + LG+ G+E+   +G +  +E   + +A  EL  SI+KG  FV+
Sbjct:  192 VNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVK 335          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V+VPV+ GHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AKAGAGSATLSMAYA A+F  + +  + G   V+EC++V S  TE  +F++ + LG+ GIE+   +G +  +E   +  A  EL  SI+KG  FV+
Sbjct:  192 VNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGQIPSFEEKMISDAIPELKASIKKGEDFVK 335          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V + V+ GH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+ GIE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  169 VKINVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V V V+ GH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+ GIE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  169 VKVNVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V V V+ GH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+ GIE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  169 VKVNVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V V V+ GH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+++ECAYV        FFA  V LG+ GIE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  169 VKVNVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANIVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SHEPC (Malate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  268 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 699
            V + V+ GH+GVTILPLLSQV+   + +  E+  LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +RGL+G+A+V+ECAYV        FFA  V LG+ GIE++   G ++ +E    +     L G I+ GV FV+
Sbjct:  169 VKINVIGGHSGVTILPLLSQVE-GVTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANVVECAYVDGGSEHAEFFAQPVLLGKNGIEKVLPYGEVSAFEANARDSMLDTLKGDIKLGVDFVK 311          
The following BLAST results are available for this feature:
BLAST of CX671830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_SHELP4.763e-3050.00Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_SHEDO4.763e-3049.31Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_PROMH6.221e-3050.69Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDHM_RAT6.221e-3046.53Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_MACFA6.221e-3046.53Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDH_SHESW8.124e-3049.31Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]
MDH_SHESR8.124e-3049.31Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESM8.124e-3049.31Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESA8.124e-3049.31Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]
MDH_SHEPC8.124e-3049.31Malate dehydrogenase OS=Shewanella putrefaciens (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D06-G11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671830 ID=CX671830; Name=CX671830; organism=Citrus sinensis; type=EST; length=699bp
ATTTTGAATTGATTAAAATGATAAGACAGGCGGCAGTTCGTCATCTACAT
ATTCTTTATCCATTCATTACAAGAATATCAAAAGAACCAAACCAACCCCA
CAAAGATGAATCTTTTGCTTCTTCTTTGTACCTAACTTAATTCCATCTGA
TTATGGAAAAACGAAAACCCTACCTCTTATTCTGGGGAAAGTAATCTTGA
GATATTTGAGGCAAACAACAAAAGCACAACCATTATCATTAGTCACCATG
TGATTGGTTACTCATTTCCTGACAAAACTGACTCCCTTCTGAATGCTTCC
CGCTAACTCTTTCTTTGCCTTCTCCAAACCAGCCCTCTCATACTCATTCA
ATGGGCCAAGTGAGTAAATTTCCTCAATTCCAGCACGGCCAAGCCGTACC
TTGGATGCAAAGAAAGGGAGTTCAGTCACCGTAGAAGCCACGTATGCACA
CTCAATAACACTGGCATCCCCCCTCAAACCTCGGAGACAAGCATCTGCAA
ACTTGGCAGCAGCATATGCCATGGATAGAGTGGCCGAACCAGCTCCAGCT
TTTGCCTCAACTACTTCTGTACCACCATTCTGGATACGATCTGTCAAGTA
GTCAATTTCTGTAGGGGTGAGAGAGCATGATGGTTTAACCTGAGATAAAA
GAGGTAAAATAGTAACCCCAGCATGACCCTCCACAACTGGAACATCAAC
back to top