CX671830

Overview
NameCX671830
Unique NameCX671830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:49..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOL6 (Malate dehydrogenase OS=Escherichia coli O6 GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECODH (Malate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECOBW (Malate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECO81 (Malate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
The following BLAST results are available for this feature:
BLAST of CX671830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_ECOUT4.308e-3152.41Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSE4.308e-3152.41Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI4.308e-3152.41Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOLC4.308e-3152.41Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_ECOL64.308e-3152.41Malate dehydrogenase OS=Escherichia coli O6 GN=mdh... [more]
MDH_ECOK14.308e-3152.41Malate dehydrogenase OS=Escherichia coli O1:K1 / A... [more]
MDH_ECOHS4.308e-3152.41Malate dehydrogenase OS=Escherichia coli O9:H4 (st... [more]
MDH_ECODH4.308e-3152.41Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOBW4.308e-3152.41Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECO814.308e-3152.41Malate dehydrogenase OS=Escherichia coli O81 (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D06-G11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671830 ID=CX671830; Name=CX671830; organism=Citrus sinensis; type=EST; length=699bp
ATTTTGAATTGATTAAAATGATAAGACAGGCGGCAGTTCGTCATCTACAT
ATTCTTTATCCATTCATTACAAGAATATCAAAAGAACCAAACCAACCCCA
CAAAGATGAATCTTTTGCTTCTTCTTTGTACCTAACTTAATTCCATCTGA
TTATGGAAAAACGAAAACCCTACCTCTTATTCTGGGGAAAGTAATCTTGA
GATATTTGAGGCAAACAACAAAAGCACAACCATTATCATTAGTCACCATG
TGATTGGTTACTCATTTCCTGACAAAACTGACTCCCTTCTGAATGCTTCC
CGCTAACTCTTTCTTTGCCTTCTCCAAACCAGCCCTCTCATACTCATTCA
ATGGGCCAAGTGAGTAAATTTCCTCAATTCCAGCACGGCCAAGCCGTACC
TTGGATGCAAAGAAAGGGAGTTCAGTCACCGTAGAAGCCACGTATGCACA
CTCAATAACACTGGCATCCCCCCTCAAACCTCGGAGACAAGCATCTGCAA
ACTTGGCAGCAGCATATGCCATGGATAGAGTGGCCGAACCAGCTCCAGCT
TTTGCCTCAACTACTTCTGTACCACCATTCTGGATACGATCTGTCAAGTA
GTCAATTTCTGTAGGGGTGAGAGAGCATGATGGTTTAACCTGAGATAAAA
GAGGTAAAATAGTAACCCCAGCATGACCCTCCACAACTGGAACATCAAC
back to top