CX671830

Overview
NameCX671830
Unique NameCX671830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:49..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECO5E (Malate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  LE     L   I  G  FV K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 76/142 (53.52%), Postives = 91/142 (64.08%), Query Frame = -1 
Query:  271 DVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFV 696
            D+ V+ GH+GVTILPLLSQ+ P    T  E+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F  +  R L G+  + ECAY+        FFA  VRLG+ G+EEI  LG L+ +E+  LE     L   I  GV FV
Sbjct:  170 DISVIGGHSGVTILPLLSQI-PHVEFTEQELKDLTHRIQNAGTEVVEAKAGAGSATLSMAYAAMRFVVSMARALNGEV-ITECAYIEGDGKFARFFAQPVRLGKNGVEEILPLGTLSAFEQQALEAMLPTLQTDIDNGVKFV 309
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSTFEQHSLDAMLDTLKKDIQLGEDFINK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312
[Close]
BLAST of CX671830 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = -1 
Query:  265 VDVPVVEGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDASVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 699
            V+VPV+ GH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAKAG GSATLSM  AAA+F  + +R L+G+  V+ECAYV        FF+  + LG+ G+EE  S+G L+ +E+  L+     L   IQ G  F+ K
Sbjct:  169 VEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK 312
The following BLAST results are available for this feature:
BLAST of CX671830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_ECO5E4.308e-3152.41Malate dehydrogenase OS=Escherichia coli O157:H7 (... [more]
MDH_ECO574.308e-3152.41Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO454.308e-3152.41Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO274.308e-3152.41Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO244.308e-3152.41Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]
MDH_ACTSZ4.308e-3153.52Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_SALTY5.626e-3151.03Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI5.626e-3151.03Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]
MDH_SALSV5.626e-3151.03Malate dehydrogenase OS=Salmonella schwarzengrund ... [more]
MDH_SALPK5.626e-3151.03Malate dehydrogenase OS=Salmonella paratyphi A (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D06-G11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671830 ID=CX671830; Name=CX671830; organism=Citrus sinensis; type=EST; length=699bp
ATTTTGAATTGATTAAAATGATAAGACAGGCGGCAGTTCGTCATCTACAT
ATTCTTTATCCATTCATTACAAGAATATCAAAAGAACCAAACCAACCCCA
CAAAGATGAATCTTTTGCTTCTTCTTTGTACCTAACTTAATTCCATCTGA
TTATGGAAAAACGAAAACCCTACCTCTTATTCTGGGGAAAGTAATCTTGA
GATATTTGAGGCAAACAACAAAAGCACAACCATTATCATTAGTCACCATG
TGATTGGTTACTCATTTCCTGACAAAACTGACTCCCTTCTGAATGCTTCC
CGCTAACTCTTTCTTTGCCTTCTCCAAACCAGCCCTCTCATACTCATTCA
ATGGGCCAAGTGAGTAAATTTCCTCAATTCCAGCACGGCCAAGCCGTACC
TTGGATGCAAAGAAAGGGAGTTCAGTCACCGTAGAAGCCACGTATGCACA
CTCAATAACACTGGCATCCCCCCTCAAACCTCGGAGACAAGCATCTGCAA
ACTTGGCAGCAGCATATGCCATGGATAGAGTGGCCGAACCAGCTCCAGCT
TTTGCCTCAACTACTTCTGTACCACCATTCTGGATACGATCTGTCAAGTA
GTCAATTTCTGTAGGGGTGAGAGAGCATGATGGTTTAACCTGAGATAAAA
GAGGTAAAATAGTAACCCCAGCATGACCCTCCACAACTGGAACATCAAC
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