CX671828

Overview
NameCX671828
Unique NameCX671828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5099 contig Csv1_Contig5099:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671828 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 39/145 (26.90%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  314 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTAIQAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 745
            V     + N   WN ++ GY +N ++ E       ++   +  P+K++F   + AC+ +  +     + + +I  G++ +  + ++L+D+Y K  +I  +R+VF  +   +V  W AMI G+A+ G   EA  VF  M E  +VS
Sbjct:  120 VLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEM-EAEHVS 263          
BLAST of CX671828 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 57/225 (25.33%), Postives = 106/225 (47.11%), Query Frame = 2
Query:  164 TLIKKC---KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI-VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIQAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER------SNVSWNALIGGLVKIGDLRSARQLF 808
            +++K C   K+     QVH+ ++  G  +D  ++   +   +S    ++ +  V+N + V+ +  + N+L+ G  +N  + E F     L+     P+       +  CS    +  G  I    +R G   D  +   L+D+YGK  +I  AR +F  +P ++VVSWT+MI  YA  GD V+A  +F  M E       ++V++  +I      G ++  ++ F
Sbjct:  190 SVVKTCASLKILQQGKQVHAMVVVTG--RDLVVLGTAMISFYSSVGLINEAMKVYNSLNVHTDEVMLNSLISGCIRNRNYKEAF-----LLMSRQRPNVRVLSSSLAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECF 407          
BLAST of CX671828 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 53/232 (22.84%), Postives = 102/232 (43.97%), Query Frame = 2
Query:  134 PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIQAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 811
            P     LSAL      +      Q+H+ + K G+E +  + +  + + +S    +  +  +F      +      +L G +QN    E    F+R+++     D      V+       S+  G  + + VI+     + FV   LI++Y K  +++ ++ VF  MP+RN VSW +MI  +A  G       L E  T  ++ P  ++V++ +L+     +G +   R+L +
Sbjct:  254 PNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDM-YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKP--TDVTFLSLLHACSHVGLIDKGRELLN 482          
The following BLAST results are available for this feature:
BLAST of CX671828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PP428_ARATH2.847e-1126.90Pentatricopeptide repeat-containing protein At5g50... [more]
PP448_ARATH3.718e-1125.33Pentatricopeptide repeat-containing protein At5g66... [more]
PP215_ARATH8.284e-1122.84Pentatricopeptide repeat-containing protein At3g05... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13D05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13D05-G9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671828 ID=CX671828; Name=CX671828; organism=Citrus sinensis; type=EST; length=813bp
GGACAGTGGGCAACTATCCCGCGAGGGAGAGCTAACTCCAATGCCCAAAA
TTGACGAACCAAACACGCCATGCAAGCACAAGTCCTGCTCTTCGATGCTA
CCTAACTGCTCACGATCAGCGCCCATCAACTTCCCAAAACCATCGTGTCT
CCTTTCCGCTTTAACCCTGATAAAGAAGTGCAAACTCCAAACTCACCTCC
ACCAGGTTCACTCTCACATCATCAAAAAGGGCCTCGAGCAAGATCACTCT
CTCGTTGCCCACTTCATCTCGCTGTGTCACTCCCTCGCCACTCCCTTATC
TTACTCTACCGCCGTCTTCAACCGCATTGTCAATCCCAATACTTTTCTTT
GGAACACCCTCTTAAAAGGGTACTCTCAGAATTCTCGTTTTATTGAGGTT
TTTACGATTTTTGTTCGATTGATTAGAGAGGAAGCGGTGCCTGATAAGTA
TACGTTCCCATTGGTAATTAAGGCGTGTTCGCATGTGCTTAGTGTGAGGG
AAGGAACGGCGATTCAAGCTGCTGTAATTAGGTGGGGGGTTGATGAGGAT
GTGTTTGTGGGAACTAGTTTGATTGACTTATATGGGAAACGTAAAGAGAT
TTCTTGCGCCCGTAAAGTGTTCGATGAAATGCCTGAGAGAAATGTTGTTT
CATGGACAGCGATGATTGTTGGATATGCGAGTGTTGGGGATTTGGTGGAA
GCGAAGACGGTTTTTGATTTAATGCCGGAGAGGAGTAATGTTTCATGGAA
TGCTTTGATTGGGGGGTTAGTGAAGATAGGAGATTTGAGAAGTGCTAGGC
AGTTGTTTGATGA
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