CX671819

Overview
NameCX671819
Unique NameCX671819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5146 contig Csv1_Contig5146:108..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK +L + Y   +  +++E ++KR+ GKLP +    L  WW  H KWPYP+E+ K  L + TGL  KQINNWFINQRKR+W
Sbjct:  261 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 343          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: RSH1_MAIZE (Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK++L + Y   +  +R+E  +K++ GKLP +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  231 KELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 313          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK+ L + Y   +  +++E+ +K++ GKLP +    L +WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  278 RELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.056e-20
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = -1
Query:  540 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 800
            +ELK  L   Y   +  +  E+ +K++ GKLP D    L  WWQ H +WPYP+E +KA L + TGL  KQINNWFINQRKR+W   P
Sbjct:  199 KELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHWKPTP 285          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.909e-20
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  552 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 797
            ELK++L + Y   +  +R+E  +K++ GKLP +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHW 82          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  552 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 797
            +LK+ L   Y   +  +  E+ RK++ GKLP D    L  WWQ H +WPYP+E +KA L + TGL+ KQINNWFINQRKR+W
Sbjct:    4 DLKNRLLNKYSGYLSSLWRELSRKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHW 85          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOX3_MAIZE (Homeobox protein knotted-1-like 3 (Fragment) OS=Zea mays GN=KNOX3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK +L + Y   + ++R+E+ +KR+  KLP +    L SWW+ H +WPYP+E +K  L + TGL+ KQINNWFINQRKR+W
Sbjct:    3 KELKKQLLRKYSGCLGNLRKELCKKRKKDKLPKEARQKLLSWWELHYRWPYPSEMEKIALAESTGLEQKQINNWFINQRKRHW 85          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica GN=OSH15 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK +L + Y   +  +R+E  +K++ GKLP +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  235 KELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica GN=OSH15 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK +L + Y   +  +R+E  +K++ GKLP +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  235 KELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.349e-19
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            +ELK +L + Y   +  +++E ++KR+ GKLP +    L  WW  H KWPYP+E  K  L + TGL  KQINNWFINQRKR+W
Sbjct:  236 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 318          
The following BLAST results are available for this feature:
BLAST of CX671819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
STM_ARATH4.637e-2049.40Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
RSH1_MAIZE4.637e-2049.40Homeobox protein rough sheath 1 OS=Zea mays GN=RS1... [more]
KNAT1_ARATH4.637e-2048.19Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
KNOS4_ORYSJ6.056e-2049.43Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]
KNOX4_MAIZE7.909e-2050.00Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]
KNX10_MAIZE1.033e-1951.22Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]
KNOX3_MAIZE1.033e-1949.40Homeobox protein knotted-1-like 3 (Fragment) OS=Ze... [more]
KNOSC_ORYSJ1.033e-1949.40Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOSC_ORYSI1.033e-1949.40Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
LET6_SOLLC1.349e-1949.40Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13C12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C12-E23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671819 ID=CX671819; Name=CX671819; organism=Citrus sinensis; type=EST; length=839bp
TTTTTTTTAACTACTAACTATTGAACTTCTTATACCATAAATAATGTTTG
CATATTTAATCTGCATTACAGTACCAAAAAAGGCTATAAGGAACTAAACA
AAAGATTATTGCACTGTACAACCTTGACCCTTCACTGTGCTTATTCACAG
ATATGATAAGCAAAAACAAAAATTATAAATCCACCACCAATATGCGACAA
TGGATTAACTCAGTTACAGTCATATAATTTCCCAAGTATTCATGTAGCTA
ATCATATGGCGTAGAATACGTGGCACCGTTTTACTTGCCTTTTAAGCATA
ACTGCAAAATGGTGTCAATTGCGTTCATAACAACCTCATCAGCCTCCTTG
TTTGCCAGTTTTGTTTTTCCTAGTTTCCAAAGCCGTTTCTGAAGCCCTAT
CTGTCACAGTTTCTATGTAATATGAGTATGTTGAATTTTATCACCCTGGC
ATTGAAGCATTGGATAGTCTTGCATTTACATGTAACGATCACTGCTGTTT
TCACCTCTTGCGTTTGCTTTTCAAGACTGTTGAAGTTGAAGGATTACTGT
GCCAGTTCCTCTTCCGCTGATTGATGAACCAATTATTGATCTGTTTTAAT
TGCAAACCGGTTTCCTGAACCAATCTTGCCTTATCTTCCTCAGTAGGGTA
TGGCCACTTGGAATGTGATTGCCACCAAGATTTGAGAACAGAGGTTGTGT
CACCAGGAAGTTTTCCGGCCCTTCTCTTGCGCAGAATTTCCTCTCTTATG
TCTACAATTTTCTCCTTGTAACCCTGTTTCAGTTCATGTTTCAACTCTTG
CCTCACGCGCTCCATCAAGGACCTCTCACTCTCTGTTGG
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