CX671819

Overview
NameCX671819
Unique NameCX671819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOX8_MAIZE (Homeobox protein knotted-1-like 8 (Fragment) OS=Zea mays GN=KNOX8 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.349e-19
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  552 ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 797
            ELKH+L + Y   +  +R+E  ++++ GKLP +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHW 82          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.762e-19
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            ++LK +L + Y   +  +++E ++KR+ GKLP +    L  WW  H KWPYP+E  K  L + TGL  KQINNWFINQRKR+W
Sbjct:  260 RDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 342          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  552 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 800
            ++LK  L + +  +I  ++ E  +K++ GKLP +    L  WW  H KWPYPTE DK  L   TGL  KQINNWFINQRKR+W
Sbjct:  223 RDLKDRLLRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHW 305          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOS9_ORYSJ (Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica GN=Os03g0772100 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  540 QELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSH-SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 800
            ++LKH+L   Y   + D+R+   ++ + GKLP +    L  WW+ H  KWPYP+E +K  L Q TGL  KQI+NWFINQRKR+W   P
Sbjct:  207 KQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTP 294          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOS7_ORYSJ (Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica GN=OSH3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  552 LKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 794
            LK  L + Y   +  +R+E+ +KR+ GKLP +    L +WW+ H +WP P+E +K  L + TGL+ KQINN FINQRKR+W
Sbjct:  228 LKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHW 308          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: KNOS5_ORYSJ (Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.016e-15
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = -1
Query:  531 PTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRR--AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 839
            P +S       V    +  L   Y   +  +  EI  K++   G LP D    L  WW  H +WPYP+E +KA L + TGL  KQ+ NWFINQRKR+W   P+ +
Sbjct:  191 PEKSAAFGENEVTTTTRRHLMNKYSGYLNSLWTEISNKKKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTNWFINQRKRHWKPKPAAA 295          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: HBX9_DICDI (Homeobox protein 9 OS=Dictyostelium discoideum GN=hbx9 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.170e-13
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  558 GYKEKIVDI--REEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 773
            G  E ++ +     I+++++ GKLPG+ TS+LK W   H+  PYPTEE+K  L   T L   QINNWF N R+R
Sbjct:  543 GNNENVIGVPFTGSIVKRKKRGKLPGEATSILKKWLFEHNMHPYPTEEEKVALANSTFLSFNQINNWFTNARRR 616          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: ME3L2_HUMAN (Putative homeobox protein Meis3-like 2 OS=Homo sapiens GN=MEIS3P2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = -1
Query:  558 DIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 752
            D+ +E  R ++ G  P   T+++++W   H   PYP+EE K +LVQ+TGL + Q+NNWFIN R+R
Sbjct:  238 DLDQEPRRNKKRGIFPKVATNIMRAWLFQHLWHPYPSEEQKKQLVQDTGLTILQVNNWFINARRR 302          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: MEIS3_HUMAN (Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  558 DIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 752
            D+ +E  R ++ G  P   T+++++W   H   PYP+EE K +L Q+TGL + Q+NNWFIN R+R
Sbjct:  255 DLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 319          
BLAST of CX671819 vs. ExPASy Swiss-Prot
Match: ME3L1_HUMAN (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  558 DIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 752
            D+ +E  R ++ G  P   T+++++W   H   PYP+EE K +L Q+TGL + Q+NNWFIN R+R
Sbjct:  154 DLDQEPRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 218          
The following BLAST results are available for this feature:
BLAST of CX671819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
KNOX8_MAIZE1.349e-1950.00Homeobox protein knotted-1-like 8 (Fragment) OS=Ze... [more]
HSBH1_SOYBN1.762e-1948.19Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]
KNAT6_ARATH6.695e-1949.40Homeobox protein knotted-1-like 6 OS=Arabidopsis t... [more]
KNOS9_ORYSJ3.323e-1846.59Homeobox protein knotted-1-like 9 OS=Oryza sativa ... [more]
KNOS7_ORYSJ1.396e-1646.91Homeobox protein knotted-1-like 7 OS=Oryza sativa ... [more]
KNOS5_ORYSJ2.016e-1538.10Putative homeobox protein knotted-1-like 5 OS=Oryz... [more]
HBX9_DICDI7.170e-1344.59Homeobox protein 9 OS=Dictyostelium discoideum GN=... [more]
ME3L2_HUMAN5.138e-1144.62Putative homeobox protein Meis3-like 2 OS=Homo sap... [more]
MEIS3_HUMAN6.711e-1143.08Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE... [more]
ME3L1_HUMAN6.711e-1143.08Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13C12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C12-E23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671819 ID=CX671819; Name=CX671819; organism=Citrus sinensis; type=EST; length=839bp
TTTTTTTTAACTACTAACTATTGAACTTCTTATACCATAAATAATGTTTG
CATATTTAATCTGCATTACAGTACCAAAAAAGGCTATAAGGAACTAAACA
AAAGATTATTGCACTGTACAACCTTGACCCTTCACTGTGCTTATTCACAG
ATATGATAAGCAAAAACAAAAATTATAAATCCACCACCAATATGCGACAA
TGGATTAACTCAGTTACAGTCATATAATTTCCCAAGTATTCATGTAGCTA
ATCATATGGCGTAGAATACGTGGCACCGTTTTACTTGCCTTTTAAGCATA
ACTGCAAAATGGTGTCAATTGCGTTCATAACAACCTCATCAGCCTCCTTG
TTTGCCAGTTTTGTTTTTCCTAGTTTCCAAAGCCGTTTCTGAAGCCCTAT
CTGTCACAGTTTCTATGTAATATGAGTATGTTGAATTTTATCACCCTGGC
ATTGAAGCATTGGATAGTCTTGCATTTACATGTAACGATCACTGCTGTTT
TCACCTCTTGCGTTTGCTTTTCAAGACTGTTGAAGTTGAAGGATTACTGT
GCCAGTTCCTCTTCCGCTGATTGATGAACCAATTATTGATCTGTTTTAAT
TGCAAACCGGTTTCCTGAACCAATCTTGCCTTATCTTCCTCAGTAGGGTA
TGGCCACTTGGAATGTGATTGCCACCAAGATTTGAGAACAGAGGTTGTGT
CACCAGGAAGTTTTCCGGCCCTTCTCTTGCGCAGAATTTCCTCTCTTATG
TCTACAATTTTCTCCTTGTAACCCTGTTTCAGTTCATGTTTCAACTCTTG
CCTCACGCGCTCCATCAAGGACCTCTCACTCTCTGTTGG
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