CX671817

Overview
NameCX671817
Unique NameCX671817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:26..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROMS (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain AS9601) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROM9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROM2 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROM0 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_TRIEI (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = -1
Query:  223 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 414
            K DIHP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNH ++ G +  +  +  +VE+F +K+
Sbjct:    3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQKIIDTEG-RVERFMRKY 65          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROMT (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K DIHP +Y +AKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_SYNPW (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH7803) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPEIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROMP (50S ribosomal protein L31 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_PROM5 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_SYNR3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain RCC307) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = -1
Query:  220 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 414
            K DIHP +Y DAKV CNGE+VMTTG T  E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTTPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
The following BLAST results are available for this feature:
BLAST of CX671817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_PROMS3.069e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM93.069e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM23.069e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM03.069e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_TRIEI4.008e-1453.1350S ribosomal protein L31 OS=Trichodesmium erythra... [more]
RL31_PROMT4.008e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNPW6.836e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMP8.928e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM58.928e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNR31.166e-1353.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C11-E21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671817 ID=CX671817; Name=CX671817; organism=Citrus sinensis; type=EST; length=558bp
GAAAAATATAATTTGATAATAATGTTTGTCGTTCAAATATCAACACATCA
TTCGATCAAATAAAATCCATCCACTCACAAACATTCCCCAATTACCTCAA
AACAACGCCGTACCAAATTTCTACTTCTTCTTGCCACCTTTAGCGGCCGC
GGACTTGCGCTTAGGCGGCAACACAATCTCTCCTTTAAGCACGGGAATTT
CCATAATCTCAGACAATCCTCCGAACTTCTGACGGAACTTCTCGACTTGG
TCGGCGTCGACGACAACAGCAGAGCGGCCGCCGAGGTAAAACGCATGGTT
TCCCGACCAGACATCCACCACGTACTCCTTCTGGGTCCCACCCGTCGTCA
TTACGAGCTCACCGTTACAGTACACTTTTGCATCCTCGTAGAATTGAGGG
TGTATGTCCTTCTTTCGACACGTCACCGCCCGGGTCCTGTAACCACTGCC
CGTTGCTGCACAGTTCTTCACCTTTCTGGTGGGGAGAATTGGAGCAGAGG
GTTTGATTTGGAAGAATGTGTTGGGTAAAGTCTGCGCCATTTTCAGTACT
GTGCGCCT
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