CX671817

Overview
NameCX671817
Unique NameCX671817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:26..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671817 vs. ExPASy Swiss-Prot
Match: RL31_MICAN (50S ribosomal protein L31 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = -1 
Query:  223 KDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 411
            K IHP +Y +AKV CNGELVMT G T+ E  V+VWSGNH FY G +  +  +  +V++F +K+
Sbjct:    3 KKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFLRKY 64
The following BLAST results are available for this feature:
BLAST of CX671817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_MICAN6.398e-1250.7950S ribosomal protein L31 OS=Microcystis aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13C11-E21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671817 ID=CX671817; Name=CX671817; organism=Citrus sinensis; type=EST; length=558bp
GAAAAATATAATTTGATAATAATGTTTGTCGTTCAAATATCAACACATCA
TTCGATCAAATAAAATCCATCCACTCACAAACATTCCCCAATTACCTCAA
AACAACGCCGTACCAAATTTCTACTTCTTCTTGCCACCTTTAGCGGCCGC
GGACTTGCGCTTAGGCGGCAACACAATCTCTCCTTTAAGCACGGGAATTT
CCATAATCTCAGACAATCCTCCGAACTTCTGACGGAACTTCTCGACTTGG
TCGGCGTCGACGACAACAGCAGAGCGGCCGCCGAGGTAAAACGCATGGTT
TCCCGACCAGACATCCACCACGTACTCCTTCTGGGTCCCACCCGTCGTCA
TTACGAGCTCACCGTTACAGTACACTTTTGCATCCTCGTAGAATTGAGGG
TGTATGTCCTTCTTTCGACACGTCACCGCCCGGGTCCTGTAACCACTGCC
CGTTGCTGCACAGTTCTTCACCTTTCTGGTGGGGAGAATTGGAGCAGAGG
GTTTGATTTGGAAGAATGTGTTGGGTAAAGTCTGCGCCATTTTCAGTACT
GTGCGCCT
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