CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9243 contig Csv1_Contig9243:71..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 4.742e-72
Identity = 128/194 (65.98%), Postives = 157/194 (80.93%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N  VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDY+QL  +A LFRP+LI+AG SAYARL DY R+R+VC++ KA
Sbjct:   53 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKA 246          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 4.742e-72
Identity = 127/195 (65.13%), Postives = 159/195 (81.54%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+  II+ E  RQ   + LI SENFT+ +V  A+G+ M NKYSEGYPGARYYGGNE+I   E LCQ+RAL+AF L P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M LDLPHGGHLSHGYQTD++KISAVS +FETMPYR++  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K
Sbjct:   18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIHRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDYKRMREIADK 212          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.193e-72
Identity = 126/186 (67.74%), Postives = 156/186 (83.87%), Query Frame = 3
Query:  234 EHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            + EK RQ + + LIPSENFTS +V+ A+GS M NKYSEGYPGARYYGGNE+ID +E LCQ RALE F LDP++WGVNVQ+LSG+P+N  VY+AL+  HDR+M LDLPHGGHLSHGYQT TKKIS +S +FET+PYRL+E TGYIDY++LE+ A  +RPK+IVAGASAY+RL DY R+R++C+K  A
Sbjct:   67 QKEKQRQKQFINLIPSENFTSQAVLDALGSPMQNKYSEGYPGARYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMGLDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNA 252          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.089e-72
Identity = 128/198 (64.65%), Postives = 160/198 (80.81%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            +E +DPE+ +I+++EK+RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWGVNVQSLSGSP+NF VYTAL+  + RIM LDLP GGHL+HG+ T  +K+SA S FF++MPY+++  +G IDYD+LE++A LFRPK+++AG S YAR  DYER RK+  K  A
Sbjct:   56 VEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGA 253          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 1.056e-71
Identity = 129/198 (65.15%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            +E VDPE+ DI+++EK RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWGVNVQ LSGSP+NF VYTA++  + RIM LDLP GGHL+HG+ T  +K+SA S FF+++PY+++ +TG IDYD+LE++A LFRPK I+AG S YAR  DYER RK+  K  A
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGA 249          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.380e-71
Identity = 127/194 (65.46%), Postives = 155/194 (79.90%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            DPE+ +++  EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDYDQL  +A LF+P+LI+AG SAYARL DY R+R+VC++ KA
Sbjct:   53 DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKA 246          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.802e-71
Identity = 128/204 (62.75%), Postives = 161/204 (78.92%), Query Frame = 3
Query:  180 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LCQKRAL+A++LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF PKLI+AG S Y+R  +Y R+RK+ ++  A
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGA 223          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 5.243e-71
Identity = 126/198 (63.64%), Postives = 156/198 (78.79%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            L   DPE+ ++++ EK RQ +GLELI SENF   + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K++SA SIFFE+MPY+LN  TG IDY+QL  +A LFRP+LI+AG SAYARL DY R+R+VC++ KA
Sbjct:   49 LSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKA 246          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.943e-71
Identity = 127/204 (62.25%), Postives = 159/204 (77.94%), Query Frame = 3
Query:  180 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            K L  PL+  D E+ +II+ E  RQ  GLEL  SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LCQKRAL+A++LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ T  KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF PKLI+AG S Y+R  DY R+RK+ ++  A
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTGKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENGA 223          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 8.943e-71
Identity = 128/204 (62.75%), Postives = 158/204 (77.45%), Query Frame = 3
Query:  180 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            K L+ PL+  D E+  II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++   TGYI+YDQLE++A+LF PKLI+AG S Y+R  DY R+RK+ +   A
Sbjct:   14 KMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGA 217          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_HUMAN4.742e-7265.98Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANAL4.742e-7265.13Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_NEUCR6.193e-7267.74Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_CAEBR8.089e-7264.65Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL1.056e-7165.15Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_BOVIN1.380e-7165.46Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN1.802e-7162.75Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_RABIT5.243e-7163.64Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB8.943e-7162.25Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_MOUSE8.943e-7162.75Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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