CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_LACLM (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 86/193 (44.56%), Postives = 119/193 (61.66%), Query Frame = 3 
Query:  201 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            E  DPE+   I  E+ RQ + +ELI SEN  S +VM A GSV+TNKY+EGYPG RYYGG E +D+ E+L   RA E F         NVQ  SGS +N   Y AL++P D ++ +DL  GGHL+HG       ++     +  +PY +N  T  +DY+++ K A   +PKLIVAGASAY+RL D+ + R++ +
Sbjct:    9 ESFDPELWAAIHAEEIRQQQNIELIASENIVSKAVMAAQGSVLTNKYAEGYPGKRYYGGTEAVDVVENLAIDRAKELFGAK----FANVQPHSGSQANAAAYMALIQPGDTVLGMDLNAGGHLTHG-----ASVNFSGKTYHFVPYGVNPQTELLDYEEILKIAKEVQPKLIVAGASAYSRLIDFAKFRQIAD 192
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_DESVV (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 88/191 (46.07%), Postives = 117/191 (61.26%), Query Frame = 3 
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DPE+   I  E  RQ   LELI SENF S +V QA GSV+T+KY+EGYPG RYYGG E++D+AE++  +RA   F  +      NVQ  SGS +N  VY A LKP D I+ ++L HGGHL+HG       ++     F  + Y + + TG IDY+Q+   A   +P LIVAGASAY R  D+ R R + ++
Sbjct:    8 DPEVGKAIILEIERQTGKLELIASENFVSAAVRQAQGSVLTHKYAEGYPGKRYYGGCEFVDIAENIAIERARTIFGCE----YANVQPHSGSQANMGVYFACLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRLFNVVFYGVEKETGRIDYEQVAALAREHKPSLIVAGASAYPRTIDFARFRAIADE 189
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_DESVH (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 88/191 (46.07%), Postives = 117/191 (61.26%), Query Frame = 3 
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DPE+   I  E  RQ   LELI SENF S +V QA GSV+T+KY+EGYPG RYYGG E++D+AE++  +RA   F  +      NVQ  SGS +N  VY A LKP D I+ ++L HGGHL+HG       ++     F  + Y + + TG IDY+Q+   A   +P LIVAGASAY R  D+ R R + ++
Sbjct:    8 DPEVGKAIILEIERQTGKLELIASENFVSAAVRQAQGSVLTHKYAEGYPGKRYYGGCEFVDIAENIAIERARTIFGCE----YANVQPHSGSQANMGVYFACLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRLFNVVFYGVEKETGRIDYEQVAALAREHKPSLIVAGASAYPRTIDFARFRAIADE 189
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 87/198 (43.94%), Postives = 124/198 (62.63%), Query Frame = 3 
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            +E  D E+A  I  E+ RQ   +ELI SEN+ S  V++  GSV+TNKY+EGYPG RYYGG E++D+AE L   RA E F  D      NVQ  SGS +N + Y AL+ P D ++A+DL HGGHL+HG       +S    F++ + Y LN + G IDY+Q  + A   +PK+I+AG SA++ + D++R R++ +   A
Sbjct:    8 VESFDSELAGAIRDERRRQEHHVELIASENYVSPRVLELQGSVLTNKYAEGYPGRRYYGGCEFVDIAEQLAIDRAKELFVAD----YANVQPHSGSQANAEAYMALMNPGDTLLAMDLSHGGHLTHG-----SPVSFSGKFYKAVHYGLN-AHGDIDYEQAAQLAQEHKPKVILAGFSAFSGIVDWQRFREIADSVNA 195
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOP1 (Serine hydroxymethyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 81/195 (41.54%), Postives = 124/195 (63.59%), Query Frame = 3 
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            LE  D +IA +++ EK RQ   +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG   +D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+P D ++ +DL HGGHL+HG       ++     F  + Y +++ T  I+Y+ + + A   +PKLIVAGASAY+R+ D++ +R++ ++
Sbjct:    6 LEREDEQIAHLVQKEKERQENSIELIASENFVSKAVMEAMGSYLTNKYAEGYPSKRYYGGCHVVDEVEDLARERVKKLFGAE----HANVQPHSGSQANMAVYFSILEPGDTVLGMDLSHGGHLTHG-----SPVNFSGRLFNFVSYGVDKETETINYETVRELALKHKPKLIVAGASAYSRIIDFKTLREIADE 191
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBB (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 83/191 (43.46%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            D EI  +IE E  RQ  G+ELI SEN  S +VM+A+GS +TNKY+EGYPG RYYGG   +D  E + ++RA E F  +      NVQ  SGS +N  VY  +L+  D ++ +DL HGGHL+HG       ++     F  + Y +++ T  I+YD + + A   +PKLIVAGASAY+R+ D+++ R++C++
Sbjct:   10 DNEIYALIEKELERQQNGIELIASENVASEAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDGVEEIARERAKELFGAE----HANVQPHSGSQANMAVYFTILEHGDTVLGMDLSHGGHLTHG-----SPVNFSGKLFNFVSYGVDKDTEEINYDVVRELAIKHKPKLIVAGASAYSRIIDFKKFREICDE 191
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBA (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 83/191 (43.46%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            D EI  +IE E  RQ  G+ELI SEN  S +VM+A+GS +TNKY+EGYPG RYYGG   +D  E + ++RA E F  +      NVQ  SGS +N  VY  +L+  D ++ +DL HGGHL+HG       ++     F  + Y +++ T  I+YD + + A   +PKLIVAGASAY+R+ D+++ R++C++
Sbjct:   10 DNEIYALIEKELERQQNGIELIASENVASEAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDGVEEIARERAKELFGAE----HANVQPHSGSQANMAVYFTILEHGDTVLGMDLSHGGHLTHG-----SPVNFSGKLFNFVSYGVDKETEEINYDVVRELAIKHKPKLIVAGASAYSRIIDFKKFREICDE 191
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSU (Serine hydroxymethyltransferase OS=Brucella suis GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 84/198 (42.42%), Postives = 124/198 (62.63%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D++ + A   +PKLI+AG +AY+R++D++R R++ ++
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFSAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADE 205
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BRUC2 (Serine hydroxymethyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 84/198 (42.42%), Postives = 124/198 (62.63%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D++ + A   +PKLI+AG +AY+R++D++R R++ ++
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFSAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADE 205
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BORPE (Serine hydroxymethyltransferase OS=Bordetella pertussis GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 87/202 (43.07%), Postives = 124/202 (61.39%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            N  L+ VDP++   I+ E  RQ + +ELI SEN+ S +VMQA G+ +TNKY+EGYPG RYYGG EY+D+ E L   R  + F  +      NVQ  SGS +N  VY A+LKP D ++ + L  GGHL+HG       ++A    +  +PY L ++   +DY Q+E+     +PKLIVAGASAYA   D+ER+ ++ +   A+
Sbjct:    5 NLTLDQVDPDVWAAIQKEDVRQEQHIELIASENYASPAVMQAQGTQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRLKQIFGAE----AANVQPNSGSQANQGVYMAVLKPGDTVLGMSLAEGGHLTHG-----ASVNASGKLYNFVPYGL-DADEVLDYAQVERLTKEHKPKLIVAGASAYALHIDFERMARIAHDNGAL 196
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_LACLM4.480e-3844.56Serine hydroxymethyltransferase OS=Lactococcus lac... [more]
GLYA_DESVV4.480e-3846.07Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_DESVH4.480e-3846.07Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_COXBR4.480e-3843.94Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_CLOP14.480e-3841.54Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_CLOBB4.480e-3843.46Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBA4.480e-3843.46Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_BRUSU4.480e-3842.42Serine hydroxymethyltransferase OS=Brucella suis G... [more]
GLYA_BRUC24.480e-3842.42Serine hydroxymethyltransferase OS=Brucella canis ... [more]
GLYA_BORPE4.480e-3843.07Serine hydroxymethyltransferase OS=Bordetella pert... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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