CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA1_RHOPA (Serine hydroxymethyltransferase 1 OS=Rhodopseudomonas palustris GN=glyA1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.641e-38
Identity = 90/197 (45.69%), Postives = 120/197 (60.91%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            +A LE  DPEIA  I  E  RQ   +ELI SEN  S +V++A GSVMTNKY+EGYPG RYYGG E++D+AE+L   RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F+ + Y +      ID D + K A   +PKLI+AG SAY R +D++R R++ +
Sbjct:   15 SASLEQADPEIAAAIRGELGRQRHEVELIASENIVSRAVLEAQGSVMTNKYAEGYPGNRYYGGCEFVDVAENLAIDRAKKLFGAN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTHG-----APVNMSGKWFKPVHYTVRREDQMIDMDAVAKLAEEAKPKLIIAGGSAYPRAWDFKRFREIAD 202          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA1_PSESM (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. tomato GN=glyA1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.641e-38
Identity = 83/191 (43.46%), Postives = 118/191 (61.78%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E L  +RA + F  D      NVQ  SGS +N  VY ALL+  D ++ + L HGGHL+HG      K+S     +  + Y ++ +TG IDYD++E+ A   +PK+++AG SAY++  D+ R R + +K
Sbjct:   12 DDALLSAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEQLAIERARQLFGAD----YANVQPHSGSQANAAVYLALLQAGDTVLGMSLAHGGHLTHG-----AKVSFSGKLYNAVQYGIDTTTGLIDYDEVERIAVECQPKMLIAGFSAYSKTLDFPRFRAIADK 193          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_SYNSC (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9605) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 88/201 (43.78%), Postives = 121/201 (60.20%), Query Frame = 3
Query:  180 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            + ++A L   DP+IA  I  E+ RQ   LELI SENF S +VMQA GSV+TNKY+EG P  RYYGG E++D  E L  +RA + F      W  NVQ  SG+ +NF V+ ALL+P D IM LDL HGGHL+HG       ++    +F  + Y +++ T  +D + + + A   +PKLIV G SAY R  D+   R + ++
Sbjct:    7 RAIDADLAQSDPDIAAFINQERQRQETHLELIASENFASRAVMQAQGSVLTNKYAEGLPSKRYYGGCEHVDAIEELAIERAKQLF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTHG-----SPVNVSGKWFNVVQYGVDKETQRLDMEAIRQLALEHKPKLIVCGYSAYPRTIDFAAFRAIADE 198          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_SYNP6 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glyA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 86/191 (45.03%), Postives = 114/191 (59.69%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP IA II  E  RQ + LELI SENF S +VM A GSV+TNKY+EG P  RYYGG E++D AE L  +RA E F         NVQ  SG+ +NF V+  LL+P D  + +DL HGGHL+HG       ++    +F    Y +N  T  +DYD + + A   RPKLI+ G SAY R  D+ + R++ ++
Sbjct:   13 DPAIAAIIGRELQRQQEHLELIASENFASPAVMAAQGSVLTNKYAEGLPSKRYYGGCEFVDQAEELAIERAKELFGAA----HANVQPHSGAQANFAVFLTLLQPGDTFLGMDLSHGGHLTHG-----SPVNVSGKWFNAGHYGVNRETERLDYDAIRELALQHRPKLIICGYSAYPRTIDFAKFREIADE 194          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_SYNE7 (Serine hydroxymethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 86/191 (45.03%), Postives = 114/191 (59.69%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP IA II  E  RQ + LELI SENF S +VM A GSV+TNKY+EG P  RYYGG E++D AE L  +RA E F         NVQ  SG+ +NF V+  LL+P D  + +DL HGGHL+HG       ++    +F    Y +N  T  +DYD + + A   RPKLI+ G SAY R  D+ + R++ ++
Sbjct:   13 DPAIAAIIGRELQRQQEHLELIASENFASPAVMAAQGSVLTNKYAEGLPSKRYYGGCEFVDQAEELAIERAKELFGAA----HANVQPHSGAQANFAVFLTLLQPGDTFLGMDLSHGGHLTHG-----SPVNVSGKWFNAGHYGVNRETERLDYDAIRELALQHRPKLIICGYSAYPRTIDFAKFREIADE 194          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 86/190 (45.26%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            DPE+   I  E  RQ   +ELI SEN  S +VM+A GSV+TNKY+EGYPG RYYGG +Y+D+AE+L   RA + F  +      NVQ  SGS +N  V+ A+LKP D I+ +DL  GGHL+HG   +         +F  + Y + ES   IDYDQ++  AT  +PKLI+AG SA  R  D+ + R++ +
Sbjct:   19 DPELFGAITDELGRQRDEIELIASENIVSAAVMEAQGSVLTNKYAEGYPGRRYYGGCQYVDVAENLAIDRAKQLFNCE----FANVQPNSGSQANQGVFQAILKPGDTILGMDLASGGHLTHGAAPNQS-----GKWFNAVHYGVRESDCLIDYDQVQALATEHQPKLIIAGGSAIPRQIDFAKFREIAD 199          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RUTMC (Serine hydroxymethyltransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 90/194 (46.39%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            L  VD EI   I  EK RQ   +ELI SEN+TS +VM+A GS +TNKY+EGYP  RYYGG EY+D  E L   RA   F  D      NVQ  SGS +N  V+ ALL P D I+ + L HGGHL+HG        S     F  + Y LNE TG I+Y+Q+E      +PK+I+AG SAY+R+ D++  R++ +
Sbjct:    8 LAKVDIEIHQAITQEKVRQEAHIELIASENYTSPAVMEAQGSQLTNKYAEGYPRKRYYGGCEYVDTVEQLAIDRAKVLFGAD----YANVQPHSGSQANAAVFQALLVPGDTILGMSLVHGGHLTHGAAP-----SFSGKNFNAIQYGLNEKTGEINYEQVEALVKKHKPKMIIAGFSAYSRVVDWQYFREIAD 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RHIEC (Serine hydroxymethyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 84/197 (42.64%), Postives = 122/197 (61.93%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            N  L  VDPEI   I  E  RQ   +ELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG +++D+AE L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + E    +D D++ + A   +PK+I+AG +AY+R++D++R R++ +
Sbjct:   11 NRSLADVDPEIFGAIGKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQFVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVREGDNLLDMDEVARKAEEHKPKVIIAGGTAYSRIWDWKRFREIAD 198          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_MICAN (Serine hydroxymethyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 87/195 (44.62%), Postives = 117/195 (60.00%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L + DP IA I++ E  RQ   LELI SENFTS +VM A GSV+TNKY+EG P  RYYGG EYID AE L   R    F  +      NVQ  SG+ +NF V+  LL+P D IM +DL HGGHL+HG       ++    +F  + Y ++  +  +DYD +   A   +PKLI+ G SAY+R  D+E+ R + ++
Sbjct:    9 LSLTDPAIAGILQKELQRQRDHLELIASENFTSAAVMAAQGSVLTNKYAEGLPKKRYYGGCEYIDEAEQLAIDRVKRLFGAN----HANVQPHSGAQANFAVFLTLLQPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFRVVQYGVSPESERLDYDLILDIARKEKPKLIICGYSAYSRQIDFEKFRAIADE 194          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_LYSSC (Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.980e-38
Identity = 82/195 (42.05%), Postives = 120/195 (61.54%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L V D  + + I  EK RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + R  E F  +      NVQ  SG+ +N  VY  +L+P D ++ ++L HGGHL+HG       ++   I +  + Y + + T  IDY+ + + A   +PKLIVAGASAY R  D+ + R++ ++
Sbjct:    6 LAVQDKAVLEGILAEKKRQQANIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----YANVQPHSGAQANMAVYHTILEPGDTVLGMNLSHGGHLTHG-----SPVNFSGILYNFVEYGVTKDTQVIDYEDVRQKALEHKPKLIVAGASAYPREIDFSKFREIADE 191          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_RHOPA7.641e-3845.69Serine hydroxymethyltransferase 1 OS=Rhodopseudomo... [more]
GLYA1_PSESM7.641e-3843.46Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA_SYNSC9.980e-3843.78Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNP69.980e-3845.03Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNE79.980e-3845.03Serine hydroxymethyltransferase OS=Synechococcus e... [more]
GLYA_SILST9.980e-3845.26Serine hydroxymethyltransferase OS=Silicibacter sp... [more]
GLYA_RUTMC9.980e-3846.39Serine hydroxymethyltransferase OS=Ruthia magnific... [more]
GLYA_RHIEC9.980e-3842.64Serine hydroxymethyltransferase OS=Rhizobium etli ... [more]
GLYA_MICAN9.980e-3844.62Serine hydroxymethyltransferase OS=Microcystis aer... [more]
GLYA_LYSSC9.980e-3842.05Serine hydroxymethyltransferase OS=Lysinibacillus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
back to top