CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9243 contig Csv1_Contig9243:71..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.217e-43
Identity = 92/199 (46.23%), Postives = 128/199 (64.32%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            LE  DP++A+ I HE  RQ   LELI SENF S +V++A GSVMTNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PK+IV GASAY R  D+   R + +K  A+
Sbjct:    4 LETFDPQVAEAIRHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKMIVVGASAYPRTIDFAAFRIIADKVGAV 193          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.590e-43
Identity = 94/196 (47.96%), Postives = 128/196 (65.31%), Query Frame = 3
Query:  207 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            VDPE+A+ IE E+ARQ   LELI SENF S +VM A GSVMTNKY+EG PGARYYGG EY+D+ E L + R  E F  +      NVQ  SG+ +N  VY A L+P   IM ++L HGGHL+HG      K++    +F  + Y +N  T  IDY++L + A   RP++IVAGASAY R+ D+++ R++ ++  A+
Sbjct:   11 VDPEVAEAIEKEEARQNNKLELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAE----HANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG-----SKVNISGKYFNIVDYGVNRDTERIDYEELREIALKARPQMIVAGASAYPRILDFKKFREIADEAGAL 197          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.076e-43
Identity = 92/195 (47.18%), Postives = 127/195 (65.13%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E++  +R  + F  +   W  NVQ  SG+ +N  V+ A+L P D  + L+L HGGHLSHG       +++  + +    Y + E TG +DYDQ+E+ A   +PKLIV G SAY+R +DY+R+R++ +K  A+
Sbjct:    4 DNIIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSETIAIERLKKLFNAE---W-ANVQPHSGAQANAAVFFAVLNPGDTFLGLNLSHGGHLSHG-----SPVNSSGVLYHATEYNVKEDTGRVDYDQMEEVALREKPKLIVGGGSAYSRDWDYKRMREIADKVGAL 189          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.076e-43
Identity = 90/195 (46.15%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDYDQL+K A   RPK+IV+GASAY R+ D+E+IR++C++
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPRIIDFEKIREICDE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.712e-43
Identity = 90/195 (46.15%), Postives = 125/195 (64.10%), Query Frame = 3
Query:  207 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            +DP++A  +  E+ RQ   +EL+ SENF S +V QA GSV+TNKYSEGYPG RYYGGNEYID+AE+L  +RA E F +       NVQ  SGS +NF+ Y A L P D+I+ ++L  GGHL+HG       +S     +E   Y+++  T  +DYD + K A  F+P LI+AGASAY+R  D++  R + ++  A
Sbjct:    6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTHG-----ASVSFSGKMYEAQSYKVDSETELLDYDAILKQAKEFKPNLIIAGASAYSRTIDFQAFRDIADEVNA 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.712e-43
Identity = 99/202 (49.01%), Postives = 124/202 (61.39%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            N  L   DPEIA  I  E  RQ   LELI SENF S +V++A GSV+TNKY+EGYPGARYYGG EY+D+ ES+  +RA E F         NVQ  SG+ +N   Y A L+P D IM + L HGGHL+HG      KI+    +F  +PY + E TG IDYD++   A   RPKLIV GASAY R  D+ R+R + +   A+
Sbjct:    4 NRSLAETDPEIARAIALEITRQGAKLELIASENFVSRAVLEAQGSVLTNKYAEGYPGARYYGGCEYVDIVESVAIRRAKEIFGAG----HANVQPHSGAQANMAAYFAFLEPGDTIMGMRLAHGGHLTHG-----AKINFSGRYFRYVPYGVEEETGRIDYDRMHAIAREHRPKLIVGGASAYPRELDFARMRAIADDVGAL 196          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.712e-43
Identity = 93/199 (46.73%), Postives = 127/199 (63.82%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L   DP IAD+IE E  RQ +GLELI SEN+TS++VM+A GSV+TNKY+EG PG RYYGG E++D  E L  +RA + F         NVQ  SG+ +N  V+TALL+P D I+ + L HGGHL+HG       ++    ++    Y ++  TG IDYD L   A   RPKLI +GASAY R+ D+ R+R++ ++  A+
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG-----SPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKARAIRPKLITSGASAYPRIIDFARMRQIADEVGAL 194          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.541e-43
Identity = 91/199 (45.73%), Postives = 127/199 (63.82%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            LE  DP +A++I  E  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+
Sbjct:    4 LETFDPAVAEVIRQETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAV 193          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.541e-43
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            DPEIA  I  E  RQ   +ELI SEN+ S +VM A+GS++TNKY+EGYPG RYYGG E +D  E L ++RA E F  +     VNVQ  SG+ +N  V  A+LKP D IM ++L HGGHL+HG       ++    +F  +PY +N+  G+IDYD++E+ A   +PK+I+AGASAYAR  D++R R++ +K  A+
Sbjct:   11 DPEIASAITDEFERQNSHIELIASENWVSPAVMSAMGSILTNKYAEGYPGRRYYGGCECVDEVEELARERAKELFGAE----YVNVQPHSGAQANMAVQFAILKPGDTIMGMNLDHGGHLTHG-----SPVNFSGSYFHVVPYGVNDE-GFIDYDKVEEIALECKPKMIIAGASAYARTIDFKRFREIADKVDAV 195          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.541e-43
Identity = 92/195 (47.18%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  D +I  IIE E  RQ  G+ELI SENFTS SVM+A+GS +TNKY+EGYPG RYYGG   +D AE L + R  + F  +     VNVQ  SGS +N  VY ++LKP D ++ + L HGGHL+HG      K+S     +  + Y LN  T  IDYD++ + A   +PK+IV+GASAY R  D+++IR++C++
Sbjct:    6 LKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHG-----SKVSFSGKLYNFVSYGLNSDTEIIDYDEMRELALKHKPKMIVSGASAYPRKIDFKKIREICDE 191          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOSL1.217e-4346.23Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_SYNWW1.590e-4347.96Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_PARD82.076e-4347.18Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_CLOBL2.076e-4346.15Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_OENOB2.712e-4346.15Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]
GLYA_DESAP2.712e-4349.01Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_CHLSY2.712e-4346.73Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_GEOBB3.541e-4345.73Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_EUBR33.541e-4347.69Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_CLOK53.541e-4347.18Serine hydroxymethyltransferase OS=Clostridium klu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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