CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:336..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.435e-54
Identity = 109/201 (54.23%), Postives = 142/201 (70.65%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDF-VATTQSANFQSEIAKLRHDVEEYAKQFPTIG 894
            GKE +Y+ +  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QVL+NC   +  L E+GY++V+GG++NHL+L++L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+S   T+ T LK+F          QS +A LR +VE +A  F   G
Sbjct:  275 GKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKAT-LKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.153e-54
Identity = 104/199 (52.26%), Postives = 146/199 (73.37%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQS-ANFQSEIAKLRHDVEEYAKQFPTIG 894
            GKE+ Y+ + KIN  VFPG QGGPHNHTI+ LAVALKQ T PEY  YQ++V+SN   FA  L+  G++LVS GT+ HL+LV+L+++ IDG+RVE VLE  +IAANKNTVPGDVSA+ P G+R+GTPA+T+RGF  E+F KVA F D AV +A+++K++ QG   K+ +A+ +  A+   ++ +L  +V  +  ++P  G
Sbjct:  293 GKEIPYELERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 4.153e-54
Identity = 108/201 (53.73%), Postives = 143/201 (71.14%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTK--LKDFVATTQSA-NFQSEIAKLRHDVEEYAKQFPTIG 894
            G+E  Y+ +  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+ +  G K  LK+F+     A      +A LR +VE +A  FP  G
Sbjct:  281 GRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 2.061e-53
Identity = 102/201 (50.75%), Postives = 147/201 (73.13%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKL---KDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 894
            GKE+ Y+ ++KIN +VFPG QGGPHNHTI  +AVALKQA +PE+K YQ++++ N   FAQ L +MGY+LVSGGT+NHL++++L   ++DG+RVE +L A++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  E+F++VA + D+AVKLA  +K+    TKL          +  N  SE+A L  ++ ++  Q+P  G
Sbjct:  288 GKEIPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.061e-53
Identity = 111/212 (52.36%), Postives = 144/212 (67.92%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE------MGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIK-----------SETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            G+E  Y+ +  IN +VFPG QGGPHNHTI  LAVALKQA TPE++AYQ QVL+N +  A  L E      +GY +VSGGT+NHLVL++LK + IDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDFA+VA   D AV +AV+I            +E    ++K F+    +     EI +LR +VE +   +P
Sbjct:  309 GEEELYNLETPINASVFPGHQGGPHNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYP 520          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 2.061e-53
Identity = 107/202 (52.97%), Postives = 141/202 (69.80%), Query Frame = -1
Query:  292 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGFEK 894
            G+E+ Y  +++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++KS+T   KL+DF +   + +     +A LR  VE++A+ FP  GF++
Sbjct:  304 GREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.692e-53
Identity = 107/199 (53.77%), Postives = 138/199 (69.35%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIG 894
            G E  YD +EKIN AVFPGLQGGPHNHTI G+AVALKQ  + ++  Y EQ+L N    A+ L + GY L +GGT+NHL+LV+L+   ++G+R E +L+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E  G  LKDF A T  +  F+ E+A+L   VEE++ +F   G
Sbjct:  310 GVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.832e-53
Identity = 106/204 (51.96%), Postives = 148/204 (72.55%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQ------SEIAKLRHDVEEYAKQFPTIG 894
            GKEV YD  ++IN +VFPG QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L++ G+ELVSGGT+ HL+L+NL N  IDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  ++FA+VA + D AVKLA+ IKS+ +    KD  A ++ A+F+       ++ +L  +V ++  +FP  G
Sbjct:  296 GKEVLYDLDKRINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQ-ESPDAKD--ARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.745e-52
Identity = 106/204 (51.96%), Postives = 140/204 (68.63%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQG------TKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 894
            GKE  +   + IN +VFPG QGGPHNHTI+ LAVALKQA TPE+  YQ+QV+SN   F   LL+ G+ELVSGGT+NHL+L+NL N  IDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF KVA + D AVKL++ +KS+         +KL  F    Q  +    + KL  +V  +   FP  G
Sbjct:  283 GKETPFTFDKTINFSVFPGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSF---KQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.630e-52
Identity = 103/197 (52.28%), Postives = 142/197 (72.08%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            GKE  YD ++KIN +VFPG QGGPHNHTIT LAVALKQA +PE+K YQ++V++N     + L E+GY+LVS GT++H+VLV+L+   +DG+RVE +LE ++I  NKN VPGD SA+ PGG+R+GTPA+TSRGF E DF KVA F D AVKL  +I++    +  K KDF A   +++    I +L+ ++  ++  FP
Sbjct:  273 GKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANKQKDFKAKIATSDI-PRINELKQEIAAWSNTFP 468          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_MOUSE2.435e-5454.23Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYM_CANAL4.153e-5452.26Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_BOVIN4.153e-5453.73Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_YEAST2.061e-5350.75Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_NEUCR2.061e-5352.36Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_HUMAN2.061e-5352.97Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR2.692e-5353.77Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_KLULA7.832e-5351.96Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA1.745e-5251.96Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR6.630e-5252.28Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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