CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_BART1 (Serine hydroxymethyltransferase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 74/191 (38.74%), Postives = 108/191 (56.54%), Query Frame = -1
Query:  298 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGF 867
            +KIN A+FPGLQGGP  H I   AVA  +A  P +K+Y   V++N    A+TL   G+ +VSGGT+NHL+LV+L++K + G R E  L   HI  NKN +P D  +  +  GIR+G+PA T+RGF+E++F +VA+     +      KS+                N   E+A ++  VE+   QFP   +
Sbjct:  258 KKINSAIFPGLQGGPLMHVIAAKAVAFGEALHPSFKSYSVNVVANAKTLAKTLQSNGFNIVSGGTDNHLLLVDLRSKNLTGKRAELALGRAHITCNKNGIPFDPETPSITSGIRLGSPAATTRGFLEKEFVQVAHLIAEVLDGLRNAKSDED--------------NHAVEMA-VKKKVEDITNQFPLYSY 433          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_BARHE (Serine hydroxymethyltransferase OS=Bartonella henselae GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 70/191 (36.65%), Postives = 108/191 (56.54%), Query Frame = -1
Query:  298 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGF 867
            +KIN A+FPGLQGGP  H I   AVA ++A  P +K Y   V++N    A+TL   G+++VSGGT+NHL+LV+L++K++ G   E  L   HI  NKN++P D+ +  +  GIR+G+PA T+RGF E +F ++A+     +      KS+   + ++  V               R  VE+   +FP   +
Sbjct:  258 KKINSAIFPGLQGGPLMHVIAAKAVAFEEALQPVFKDYSANVVANAKTLAKTLQSNGFDIVSGGTDNHLLLVDLRSKKVTGKCAELALGRAHITCNKNSIPFDLETPFITSGIRLGSPAATTRGFAENEFIEIAHMISEILDNLGMAKSDEDNSAVEMVV---------------RKKVEDMTNKFPLYSY 433          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_LEPCP (Serine hydroxymethyltransferase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = -1
Query:  487 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEE 867
            ++IN A+FPG+QGGP  H I G AVA ++A  PE+KAYQEQV+ N +  A+TL   G  +VSG TE+H++LV+L+ K I G   E +L   HI  NKN +P D    MV  GIR+G+PA+T+RGF EE
Sbjct:  248 KQINSAIFPGIQGGPLMHVIAGKAVAFQEALQPEFKAYQEQVVKNATAMAETLTARGLRIVSGRTESHVMLVDLRPKGITGKEAEALLGRAHITCNKNGIPNDPQKPMVTSGIRLGSPAMTTRGFKEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DICNV (Serine hydroxymethyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  469 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 870
            ++K+N A+FPG QGGP  H I   AVA K+A  P ++ YQEQV+ N    A+  +  GY++VSGGT+NHL+LV+L NK + G      L   HI  NKN+VP D  S  V  GIR+GTPA+T+RGF   +  KVA
Sbjct:  248 EKKLNSAIFPGSQGGPLMHVIAAKAVAFKEALEPSFQKYQEQVVENAKTMAKVFIARGYDIVSGGTQNHLMLVSLINKGLTGKAANDALSRAHITVNKNSVPNDPQSPFVTSGIRIGTPAITTRGFGVNEVKKVA 382          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = -1
Query:  415 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQ 870
            + K+N+++FPG QGGP  H I   A+  K+A    +K Y  +++SN    A  L   G+ LVSGGT+NHL+L++L+N  I G   E +L+  +I  NKNTVP D  S  V  GIR+GTPA+T+RGF E+D A VA      VK   K K + +
Sbjct:  247 EHKLNKSIFPGTQGGPLMHVIAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAISLVVKDVDKNKEQAK 399          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA3_BURS3 (Serine hydroxymethyltransferase 3 OS=Burkholderia sp. (strain 383) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 74/188 (39.36%), Postives = 107/188 (56.91%), Query Frame = -1
Query:  310 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 870
            ++ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQE+V+ N    A+TL++ G  +VSG TE+H++LV+L+ K I G   E  L A HI  NKN +P D     V  G+R+G+PA+T+RGF   +                   +E  G  + D +   + A   + I ++R  V E  K+FP
Sbjct:  247 EKPINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEKVVENARVLAETLVKRGLRIVSGRTESHVMLVDLRAKHITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFGPAE-------------------AEQVGNLIADVLDNPEDA---ATIERVRAQVAELTKRFP 412          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFT (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  406 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 867
            +K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L  VHI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         D  V  AV+ K   Q  K
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADVTVIAAVREKVAAQCKK 412          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XYLF2 (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M23) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  406 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 867
            +K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L  VHI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         D  V  AV+ K   Q  K
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADVTVIAAVREKVAAQCKK 412          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_SHESR (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-7) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = -1
Query:  484 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 867
            +K+N AVFPG QGGP  H I G AVA K+A  PE+KAYQ+QV+ N     +  LE GY++VSGGT+NHL+LV+L  + + G   +  L + +I  NKN+VP D  S  V  G+R+GTPA+T RGF E +
Sbjct:  250 KKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEPEFKAYQQQVVKNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_SHESM (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 65/129 (50.39%), Postives = 87/129 (67.44%), Query Frame = -1
Query:  484 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 867
            +K+N AVFPG QGGP  H I G AVA K+A  PE+KAYQ+QV+ N     +  LE GY++VSGGT+NHL+LV+L  + + G   +  L + +I  NKN+VP D  S  V  G+R+GTPA+T RGF E +
Sbjct:  250 KKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEPEFKAYQQQVVKNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BART18.426e-3138.74Serine hydroxymethyltransferase OS=Bartonella trib... [more]
GLYA_BARHE8.426e-3136.65Serine hydroxymethyltransferase OS=Bartonella hens... [more]
GLYA_LEPCP1.100e-3051.56Serine hydroxymethyltransferase OS=Leptothrix chol... [more]
GLYA_DICNV1.100e-3048.89Serine hydroxymethyltransferase OS=Dichelobacter n... [more]
GLYA_CLOPH1.100e-3043.79Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA3_BURS31.100e-3039.36Serine hydroxymethyltransferase 3 OS=Burkholderia ... [more]
GLYA_XYLFT1.437e-3044.17Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_XYLF21.437e-3044.17Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_SHESR1.437e-3050.39Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHESM1.437e-3050.39Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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