CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:336..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.386e-41
Identity = 84/188 (44.68%), Postives = 127/188 (67.55%), Query Frame = -1
Query:  313 D*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQF 876
            D + +IN AVFP  QGGPH +TI G+AVALK+A++P+++ Y +QV  N     + L + GY LV+ GT+NHLVL +L+ + I GS++EK  +  HI  NKN V GD +A+ PGG+R+G PALTSRG  E+DF KV  F D  VK+++ I+S+  G K+ DF    ++     ++ ++R +V+E++ +F
Sbjct:  292 DLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKV-GKKMPDF---QRAIADNQDLKQIRQEVKEFSTKF 475          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.618e-35
Identity = 79/191 (41.36%), Postives = 110/191 (57.59%), Query Frame = -1
Query:  301 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 870
            ++ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K+I G   EKVL   HI  NKN +P D     V  G+R+G+PA+T+RGF E +  KVA+                             + + ++ IA +R  V E  KQFP  G
Sbjct:  247 EKAINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAHL----------------------IADVLDNPHDEANIAAVRAKVAELTKQFPVYG 415          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.618e-35
Identity = 81/187 (43.32%), Postives = 114/187 (60.96%), Query Frame = -1
Query:  310 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 867
            ++I++AVFPG+QGGP  H I   AVA K+A TPE+K YQ+Q++ N    A+ L+ +GY LVSGGT+NHL+LV+L++K I G   EK LE   I  NKN +P D     V  GIR+GTPALT+RG  E++   VA       +L  ++ S  + +K+K+               K++ +VEE  KQFP
Sbjct:  244 KEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVA-------RLIHEVLSNFKDSKVKE---------------KVKKEVEELCKQFP 408          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DESDG (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.641e-34
Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = -1
Query:  310 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 867
            +K+N  +FPG+QGGP  H I   AVA  +A  PE+ AYQ+QV++N +K A TL + G+ELVSGGT+NHL+LV+L NK I G   +  L+   I ANKNTVP +  S  V  GIR+GTPALT+RG  E +  KVA +   A+     I +ET+                   +A++  DVE++A+QFP
Sbjct:  244 KKLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPEFGAYQKQVVANAAKLAATLTDAGFELVSGGTDNHLMLVDLTNKDITGKDAQHALDLAGITANKNTVPFETRSPFVTSGIRLGTPALTTRGMKEAEMVKVAGWIIDALG---NIGNETR-------------------LAEISRDVEKFARQFP 408          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = -1
Query:  445 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 864
            KIN+AVFPG+QGGP  H I   AVA K+A  P +K YQ +++SN    A  LLE G+ELVSGGT+NHL+LV+L++K+I G   +++ +AV +  NKN VP D     +  GIR+GTPA+TSRG  E+D  ++A   D A++
Sbjct:  250 KINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = -1
Query:  469 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 861
            I++++FPG+QGGP  H I   AVALK+A T E++ YQ Q+L N    ++ L+E G+ LVSGGT+NHL+LV+L+NK I G   EK L++++I  NKN +P D  S MV  GIR+GTPA+T+RGF EED  +VA
Sbjct:  251 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVA 382          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.389e-33
Identity = 69/132 (52.27%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  469 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 861
            I++A+FPGLQGGP  H I   AV+ K+A +PE+KAYQEQV+ N +K  + L   G+ LVSGGT+NHL+L++L+NK I G   EK+L+ V +  NKNT+P D  S  V  GIR+GTPA+T+RG  E+D   +A
Sbjct:  248 IDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIA 379          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.814e-33
Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = -1
Query:  310 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 867
            ++I++AVFPG+QGGP  H I   AVA K+A +PE+K YQ+Q++ N    A+ L+++GY LVSGGT+NHL+LV+L++K I G   EK LE   I  NKN +P D     +  GIR+GTPALT+RG  E++   +A       +L  ++ S  +  ++K+               K++ +VEE  KQFP
Sbjct:  244 KEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIA-------RLIHEVLSNFKDERVKE---------------KVKKEVEELCKQFP 408          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.814e-33
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = -1
Query:  469 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 870
            ++K+N  VFPG QGGP  H I G AVA K+A  PE+KAYQ+QV++N    AQ L+E GY++VSGGT+NHL L++L +K + G   +  L   HI  NKNTVP D  S  V  G+R+GTPA+T+RGF EE+  ++A
Sbjct:  249 EKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA 383          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.094e-33
Identity = 67/142 (47.18%), Postives = 99/142 (69.72%), Query Frame = -1
Query:  448 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 870
            K++I++A+FPGLQGGP  H I   AV+ ++A + E+K YQ+QV+ N S  A  L  +GY+LV+GG++NHL+LV+L+ K + G + E+VL+ VHI  NKN VP D     V  G+R+GTPA+T+RGF E++  +VA   D  +
Sbjct:  243 KKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI1.386e-4144.68Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYA_RALPJ9.618e-3541.36Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_DICT69.618e-3543.32Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_DESDG1.641e-3444.39Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA_PELTS1.063e-3349.65Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_CALS81.063e-3353.03Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_ALKOO1.389e-3352.27Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA_DICTD1.814e-3341.18Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_ALHEH1.814e-3351.85Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_NATTJ3.094e-3347.18Serine hydroxymethyltransferase OS=Natranaerobius ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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