CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:336..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_UNCTG (Serine hydroxymethyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=glyA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 64/150 (42.67%), Postives = 94/150 (62.67%), Query Frame = -1
Query:  421 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 867
            +KIN A+FPG QGGP  H I   AVA  +A  PE+K YQ+QVL+N  + A+TL E   ++VSGGT++H+ LV+L+   + G   +  LE   I  NKN +P D+    +  GIR+G+PA+T+RG  E +  K+A   +A +K+   I +E
Sbjct:  245 KKINSAIFPGEQGGPLMHVIAAKAVAFGEALKPEFKEYQKQVLANAKQLAETLEEGKLKIVSGGTDSHMFLVDLRPLNVKGKNAQDTLEKAGITLNKNGIPYDLEKPTMTSGIRIGSPAVTTRGMKEPEMVKIA---EAIIKVLKNIDNE 391          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_MARMM (Serine hydroxymethyltransferase OS=Maricaulis maris (strain MCS10) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 61/133 (45.86%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  472 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 867
            +K N A+FPGLQGGP  H I G AVA  +A  PE+K Y  +V++NC   ++ + + GY +VSGGT++HL LV+L+ K + G+  E+ LE   I  NKN VP D     V  G+R+G+PA T+RGF   +F  V
Sbjct:  260 KKFNSAIFPGLQGGPLMHVIAGKAVAFGEALQPEFKDYVTRVVANCQALSKAITDGGYAIVSGGTDSHLALVDLRPKGLKGNSAEQALERAFITCNKNGVPFDPEKPTVTSGLRVGSPAATTRGFGVAEFTLV 392          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_FLAPJ (Serine hydroxymethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 60/139 (43.17%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  448 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVP-GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 861
            ++ +VFPG QGGP  H I   AVA  +A T E+  Y  QV  N    A   ++  Y ++SGGT+NH++L++L+NK I G   E  L    I  NKN VP  D S  V  GIR+GTPA+T+RG +EED   +  F D  +
Sbjct:  258 LDMSVFPGNQGGPLEHIIAAKAVAFGEALTDEFFRYAMQVQKNAKAMAAAFVKRDYHIISGGTDNHMMLIDLRNKNISGKEAENALVKAEITVNKNMVPFDDKSPFVTSGIRVGTPAITTRGLLEEDMETIVAFIDKVI 396          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ELUMP (Serine hydroxymethyltransferase OS=Elusimicrobium minutum (strain Pei191) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  457 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 861
            +N +VFPG QGGP  H I   AV   +A  PE+K YQ QV+ N  + +  L ++GY +VSGGT+ H++ V+L +K + G   E+ L+   I  NKNT+P D     +  G+R+GTPA+T+RG  E + A +A F D
Sbjct:  247 VNSSVFPGQQGGPLMHVIAAKAVCFGEALKPEFKEYQTQVVKNAKELSTQLQKLGYRIVSGGTDCHVLCVDLTSKSMTGKAAEEALDKAGITTNKNTIPYDTQKPFITSGVRLGTPAVTTRGMKEAEMAAIASFID 382          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_BRASB (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  472 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 867
            +K+N A+FPGLQGGP  H I   AVA  +A  PE+K Y + ++ N    A++L   G+++VSGGT+NHL+LV+L+ K + G+  EK L    I  NKN +P D     V  G+R+GTPA T+RGF   +F +V
Sbjct:  261 KKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPEFKTYAKNIVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQV 393          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA3_COLP3 (Serine hydroxymethyltransferase 3 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  481 D*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDF 876
            D  +KIN AVFPGLQGGP  H I   AVAL +   P + AY +QVLSN    A TL + G ++V+ GT+ HL+LV+L+ K + G+  E+ LE   I  NKN +P D    MV  GIR+GTPA TSRGF  ++F
Sbjct:  256 DVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEPSFGAYIKQVLSNARVLASTLQQRGCDIVTDGTDTHLMLVDLRPKGLKGNTTEESLERAGITCNKNGIPFDSEKPMVTSGIRLGTPAGTSRGFGNDEF 388          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA2_RALEJ (Serine hydroxymethyltransferase 2 OS=Ralstonia eutropha (strain JMP134) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  472 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKV 867
            +KIN AVFPGLQGGP  H I   AVA  +A T +++ Y + VL+N     + L E G +LV+GGT+NHL+LV+L+ K + G++VE+ LE   I  NKN +P D     +  GIR+G PA T+RGF   +F ++
Sbjct:  253 KKINSAVFPGLQGGPLMHVIAAKAVAFGEAMTSDFRTYIDNVLANAKALGEVLKEGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGAPAATTRGFGVAEFREI 385          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_PROM3 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.382e-27
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  469 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 864
            K ++AVFPG QGGP  H I   AVAL +A  PE+ AY  QV++N    A  + E G  +VSGGT+NHLVL++L++  + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+RGF EE F +VA
Sbjct:  255 KFDKAVFPGSQGGPLEHVIAAKAVALGEALQPEFHAYSCQVVANAQVLAGRIQERGIAVVSGGTDNHLVLLDLRSIGMTGKVADLLVSDVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFDEEAFREVA 387          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_PROM0 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.382e-27
Identity = 61/133 (45.86%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  472 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 867
            +K +++VFPG QGGP  H I   AVA  +A  P++  Y +QV+ N    A TL+  G ++VSGGT+NH+VL++L++  + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+RGF E  FA+V
Sbjct:  248 KKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQPDFVNYSQQVIKNAKVLASTLINRGIDIVSGGTDNHIVLLDLRSINMTGKIADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNENAFAEV 380          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_MYCA5 (Serine hydroxymethyltransferase OS=Mycoplasma arthritidis (strain 158L3-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.382e-27
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = -1
Query:  340 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRH 867
            +KI++AVFPG QGGP  H I   AV+  +A  PE+  YQ Q++ NC  F QT +  G  ++SG T+NHL  +++K    + G + E++L  ++I  NKNT+P D  S MV  GIR+G  A+TSR F E++F  +A   D A++   +  +ET    +K             EIAKL H
Sbjct:  245 KKIDRAVFPGNQGGPLFHQIAAKAVSFYEALQPEFIEYQRQIILNCKVFCQTFINKGVRVISGMTKNHLFTIDVKTSYNLTGKQAEQILSKMNITVNKNTIPFDTESPMVSSGIRLGVAAMTSRDFKEDEFIILANLIDKALR---EPNNETLHQVIK------------KEIAKLSH 407          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_UNCTG5.652e-2742.67Serine hydroxymethyltransferase OS=Uncultured term... [more]
GLYA_MARMM5.652e-2745.86Serine hydroxymethyltransferase OS=Maricaulis mari... [more]
GLYA_FLAPJ5.652e-2743.17Serine hydroxymethyltransferase OS=Flavobacterium ... [more]
GLYA_ELUMP5.652e-2742.65Serine hydroxymethyltransferase OS=Elusimicrobium ... [more]
GLYA_BRASB5.652e-2745.11Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA3_COLP35.652e-2749.62Serine hydroxymethyltransferase 3 OS=Colwellia psy... [more]
GLYA2_RALEJ5.652e-2745.86Serine hydroxymethyltransferase 2 OS=Ralstonia eut... [more]
GLYA_PROM37.382e-2749.62Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM07.382e-2745.86Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_MYCA57.382e-2739.33Serine hydroxymethyltransferase OS=Mycoplasma arth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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