CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:336..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DESDA (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = -1 
Query:  310 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 861
            +N  +FPG+QGGP  H I   AVAL +A  P +K YQ+QVL N +  A  L E GY+LVSGGT+NHL+LV+L ++ I G   E  L+   I  NKNTVP +  S  V  GIR+GT ALT+RG  +E    V  F                       +A  +  N  +E+ K+R +VEE+A QFP
Sbjct:  246 LNSQIFPGIQGGPLMHVIAAKAVALGEALHPAFKVYQQQVLDNAATLAACLTEAGYDLVSGGTDNHLMLVDLTSRDITGKDAEIALDTAGITVNKNTVPFETRSPFVTSGIRLGTAALTTRGMKQEHMRTVGQF----------------------IIAALEKRNDTAELEKIRKNVEEFAHQFP 408
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CUPTR (Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 75/191 (39.27%), Postives = 108/191 (56.54%), Query Frame = -1 
Query:  301 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 870
            ++ IN ++FPG+QGGP  H I G AVA K+A TPE+KAYQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+                   +   G  + D +     A   + IA +R  V    K+FP  G
Sbjct:  247 EKAINSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEE-------------------ARIVGNLIADVLDNPHDA---ANIAAVREQVSALTKRFPVYG 415
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_LAWIP (Serine hydroxymethyltransferase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 75/185 (40.54%), Postives = 107/185 (57.84%), Query Frame = -1 
Query:  310 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 861
            IN  +FPG+QGGP  H I   AVAL +A+   +  YQ+QV+ N    A+ LL+ G+ LVSGGT+NHL+L++L NK+I G   EK L+   I  NKNTVP + +S  V  GIR+GTPALT+RG  E+D  KVA +                       V    + N ++++ ++  +V  +A+QFP
Sbjct:  246 INSQIFPGIQGGPLMHVIAAKAVALGEASKASFVTYQKQVILNAKTLAKQLLDAGFNLVSGGTDNHLLLIDLTNKKITGKDAEKALDQAGITVNKNTVPFETLSPFVTSGIRIGTPALTTRGLCEQDMIKVANW----------------------IVTALNNINNETQLKEINKEVTYFARQFP 408
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 67/140 (47.86%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++ +FPG+QGGP  H I   AV   +A   EYK Y +Q++ N   F + L++ G+ LVSGGT+NHL+LV+L NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  248 LDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 67/140 (47.86%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++ +FPG+QGGP  H I   AV   +A   EYK Y +Q++ N   F + L++ G+ LVSGGT+NHL+LV+L NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  248 LDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = -1 
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESDA2.619e-3242.16Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA_CUPTR2.619e-3239.27Serine hydroxymethyltransferase OS=Cupriavidus tai... [more]
GLYA_LAWIP3.421e-3240.54Serine hydroxymethyltransferase OS=Lawsonia intrac... [more]
GLYA_CLOK53.421e-3247.86Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK13.421e-3247.86Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOBM3.421e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK3.421e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ3.421e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBH3.421e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB63.421e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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