CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:336..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = -1
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.421e-32
Identity = 67/140 (47.86%), Postives = 97/140 (69.29%), Query Frame = -1
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            I+++VFPG+QGGP  H I G AV   +A   ++K Y +Q+++N   FA  L + G+ +VSGGT+NHL+LV+L NK I G   E +L++V I ANKNT+P +  S  +  GIRMGTP++T+RGF EE+  KVAYF +  ++
Sbjct:  248 IDKSVFPGMQGGPLMHIIAGKAVCFGEALKDDFKDYAQQIVNNAKVFADELTKYGFRIVSGGTDNHLLLVDLTNKNITGKDAEHLLDSVGITANKNTIPFEKKSPFITSGIRMGTPSVTTRGFKEEEMKKVAYFINYVIE 387          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+  GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ORITI (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Ikeda) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 78/188 (41.49%), Postives = 106/188 (56.38%), Query Frame = -1
Query:  310 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA-YFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 867
            +KIN AVFPG+QGGP  H I   A+A  +A  P+YK Y  QV+ N    A+ L + GY +++GGT+NH++LV+L+ K I G   E +L+A  I  NK  +P D  S  +  GIR+GTPA T+RGF E DF  V  Y  D    +A+ IKS     K +D   T    +  S I   +  V+E    FP
Sbjct:  239 KKINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENDFITVGKYIADILDNIAI-IKS---AKKNEDITITEIENSLDSVITHTKQHVQELCNSFP 422          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ONYPE (Serine hydroxymethyltransferase OS=Onion yellows phytoplasma GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 71/151 (47.02%), Postives = 100/151 (66.23%), Query Frame = -1
Query:  448 KEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK--RIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 891
            +EVF    +KIN+ +FPG+QGGP  HTI   AVA ++A  P +K YQ+QV+ N + FA+   + GY +VSGGT+NHL L+++K+K     GS++  +LE ++I  NKNT+P D     V  GIR+GTPA+T+ GF E DF  VA   D A+
Sbjct:  245 EEVF----KKINRGIFPGIQGGPCIHTIAAKAVAFQEAMMPSFKEYQKQVIKNANTFAKAFQQKGYRIVSGGTDNHLFLIDVKHKNPEFTGSKIANMLEKINIVVNKNTIPFDQEKPFVTSGIRIGTPAMTTVGFRENDFILVADLMDKAI 391          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = -1
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +N+ +FPG+QGGP  H I   AV  K+A  P +K Y E V+ NC + A+ L+  G+++VSGGT+NH+ LV+L NK I G   E +L++V I  NKNTVP +  S  V  GIR+GT A+T+RGFV++D A++A     A++
Sbjct:  248 LNKNIFPGIQGGPLEHIIAAKAVCFKEALDPSFKTYGENVVENCKELAEQLIARGFKIVSGGTDNHVFLVDLNNKDITGKEAEALLDSVGITVNKNTVPNETRSPFVTSGIRIGTAAITTRGFVKDDMAEIAAVISEAIE 387          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_RALEH (Serine hydroxymethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 75/191 (39.27%), Postives = 106/191 (55.50%), Query Frame = -1
Query:  301 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 870
            ++ IN A+FPG+QGGP  H I G AVA K+A TPE+K YQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   HI  NKN +P D     V  GIR+G+PA+T+RGF EE+                   +   G  + D +     A   + IA +R       K+FP  G
Sbjct:  247 EKAINSAIFPGIQGGPLMHVIAGKAVAFKEALTPEFKEYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEEE-------------------ARIVGNLIADVLDNPHDA---ANIASVREQAAALTKRFPVYG 415          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOD6 (Serine hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = -1
Query:  418 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET 861
            I++A+FPG+QGGP  H I   AV  K+A + E+K YQ QV  N    A+ L++  ++L+SGGT+NHL+L++L NK I G   EK L+  +I ANKNT+P D + A+V  GIR+GTPA+T+RG  EED A +A   D  +    + K+ T
Sbjct:  247 IDKAIFPGIQGGPLEHIIASKAVCFKEALSDEFKEYQVQVAKNAKALAEELIKRDFKLISGGTDNHLILLDLTNKNITGKAAEKRLDDAYITANKNTIPFDPNGALVTSGIRLGTPAVTTRGMKEEDMAIIAEAIDLCLTYDEESKART 395          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ORITB (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Boryong) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = -1
Query:  310 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA-YFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 867
            +KIN AVFPG+QGGP  H I   A+A  +A  P+YK Y  QV+ N    A+ L + GY +++GGT+NH++LV+L+ K I G   E +L+A  I  NK  +P D  S  +  GIR+GTPA T+RGF E +F  V  Y  D    +A+ IKS     K +    T    +  S I + +H V+E    FP
Sbjct:  239 KKINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENEFITVGKYIADILDNIAI-IKS---AKKNEGITITEIEKSLNSVITRTKHHVQELCNCFP 422          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_COXBU (Serine hydroxymethyltransferase OS=Coxiella burnetii GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  463 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 870
            ++++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  248 EKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOB13.421e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOAB3.421e-3247.86Serine hydroxymethyltransferase OS=Clostridium ace... [more]
GLYA_STRM54.468e-3250.00Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_ORITI4.468e-3241.49Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_ONYPE4.468e-3247.02Serine hydroxymethyltransferase OS=Onion yellows p... [more]
GLYA_CLOB84.468e-3246.43Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_RALEH5.835e-3239.27Serine hydroxymethyltransferase OS=Ralstonia eutro... [more]
GLYA_CLOD65.835e-3246.31Serine hydroxymethyltransferase OS=Clostridium dif... [more]
GLYA_ORITB7.621e-3240.96Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_COXBU7.621e-3248.18Serine hydroxymethyltransferase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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