CX671780

Overview
NameCX671780
Unique NameCX671780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.813e-55
Identity = 94/145 (64.83%), Postives = 113/145 (77.93%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYE-GLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            +V+C  HMCPIR+HWHVK+NYREYWRVKIT TNFN   NY+ WNLVV HPN  ++ Q+FSF YKSLTPY+  +NDT M WG++FYND L + G  GNVQ+ELL +KD   FTF +GWAFPRRI FNGD CVMP PD +P LP ++
Sbjct:  282 VVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNWNLVVLHPNLKSVQQVFSFNYKSLTPYQNSINDTGMFWGVQFYNDVLLQEGKIGNVQTELLLKKDMGNFTFREGWAFPRRILFNGDECVMPSPDDFPRLPKSA 426          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.182e-53
Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = -1
Query:  458 QCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPN 877
            +C  HMCP+RVHWHVK++YREYWRVK+TITN+N   NYS WNLVVQHPN  +LTQLFSF Y+ L  Y  LNDT M WGI++YN+ + +   +GNVQ+E++ +KD S FTF  GWAFPRR+YF+G  CVMPPPD YP LPN
Sbjct:  276 RCTDHMCPVRVHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQLFSFNYQPLIEYGTLNDTGMFWGIQYYNEMMLQ---DGNVQTEMILKKDKSDFTFSGGWAFPRRVYFDGHECVMPPPDQYPLLPN 412          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.566e-42
Identity = 80/141 (56.74%), Postives = 105/141 (74.47%), Query Frame = -1
Query:  470 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKD---ASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYP 883
            ++QC SHMCP++++WH+ L  +E++RVKIT+TN NY MN++ WNLVVQ+    ++TQ+  F YKS+   + +NDT MLWG+K Y D L +AG  GNVQ EL+ RKD   +ST    KG AFP R+YFNGDNCVMPPPDAYP
Sbjct:  281 LLQCTSHMCPVKINWHLMLKDKEHYRVKITVTNLNYRMNFTEWNLVVQYHPILDITQISGFNYKSIQVGK-INDTTMLWGVKPYYDLLMQAGPLGNVQGELIVRKDFRASSTTNNNKGRAFPVRVYFNGDNCVMPPPDAYP 420          
The following BLAST results are available for this feature:
BLAST of CX671780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBL6_ARATH2.813e-5564.83COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ORYSJ1.182e-5364.29COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]
COBL4_ORYSJ3.566e-4256.74COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B04-C7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671780 ID=CX671780; Name=CX671780; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTTTTTTTTTTTAACAGAACAAGATATCAACTATAATTTCTTCAT
GGAGTTCCTTATTACAAATACTTTTCTTGTGGGATATCCTACAAACAATT
TTTTTATCAAGTGTATGTATAGATAAACATACAACACAACAAATAACTCA
AAAAAATATGGCAAAAACTTCTGATTCCCAATACATAATTAGATGAAAAG
CATGTACAGCAGCAGGCTGTAATGCATCTGAACCCTCTTTATGCTGTGTA
CAAGTTGCAGCACTTGCACATTGAACCCGAGCACCAGGATTACATATGCT
TCAGCACATATCAAACCAGATAGCACGTCAAGAACGTTCTAGAAGTTAGC
CTTTTGGCCTCAGATATAATTCATCACACACAAGCCAATAACAATACCCA
AGATGCCAAGATTATTATGGCTGAACGAAGTAGAGAAATAACAGGCCGGG
AACTTGCGTTTGGCAACCACGGGTAGGCATCTGGAGGTGGCATCACACAG
TTATCTCCATTAAAATAAATCCTTCTAGGGAAAGCCCAACCCTTCTCAAA
AGTAAATGTTGATGCGTCTTTTCGAAACAGCAGCTCTGACTGCACGTTCC
CATTAGAGCCTGCTTCAGAGAGAAAATCATTGTAAAACTTTATTCCCCAC
AGCATGGCTGTATCATTTAAGCCTTCATAAGGAGTTAATGACTTGTAATA
AAAGCTGAAAAGCTGTGTGAGATTATCAAAGTTGGGGTGTTGCACGACTA
GATTCCACAGTGAGTAATTCATTGCGTAATTAAAATTAGTGATTGTGATC
TTCACACGCCAGTACTCCCTATAATTGAGCTTGACATGCCAATGAACTCG
GATGGGACACATATGGCTGGGACACTGGACCAT
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