CX671778

Overview
NameCX671778
Unique NameCX671778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10254 contig Csv1_Contig10254:45..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.948e-13
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = -2
Query:  275 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA 646
            +LS L+ L+   N L G IPP++GNLT +  L LS N LTGS+P    +L ++  L +  N+++GK+P  L  LK L+ F +  N+++G+IP   +          + N     LP  + + P+
Sbjct:   99 LLSNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLILQIDYNEISGKLPTSLANLKKLKHFHMNNNSITGQIPPEYSTLTNVLHFLMDNNKLTGNLPPELAQMPS 222          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  197 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDSFFITFT 625
            L L  N++ G IP  IG L  +  L+LS NNL+G +P   SN + ++ L+LSNN L G +P  L  L  L+V  V+ N+L+G+IP+      + N      N+F   +P            +S+G+  +  L+D+ S  I+ T
Sbjct:  472 LRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIP------------SSLGHCTNLQLLDLSSNNISGT 602          

HSP 2 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = -2
Query:  368 LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV-FSVAYNNLSGEIPE 856
            LDLS NNL GP+P    N    +  + S++              QG+L                       L+ L  LD+S N L G IP  +G+L  +  L LS N+  G IPS+  +  +++ LDLS+N ++G IP +L +++ L++  ++++N+L G IPE
Sbjct:  496 LDLSENNLSGPVPLEISNCRQLQMLNLSNNT------------LQGYLPLSLSS-----------------LTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPE 630          

HSP 3 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  371 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 643
            L  LS LDLS N L G +P +I N  ++Q LNLS+N L G +P + S+L  ++ LD+S+N L GKIP  L  L +L    ++ N+ +GEIP
Sbjct:  490 LQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIP 580          

HSP 4 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = -2
Query:  368 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 634
            L+ +DLS N   G IP   GNL+ +Q L LS NN+TGSIPS  SN   +    +  N+++G IP ++  LK L +F    N L G IP+
Sbjct:  325 LNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPD 413          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 53/164 (32.32%), Postives = 75/164 (45.73%), Query Frame = -2
Query:  230 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN--------------------------LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNL 643
            L  L  L L  N L G +P  I +L  ++ L L HNN                          L+G+IPS   NL  +  L L NN  +G  P   ++L +++V +++YNNLSG IPE         E S+ GN+ LCG PL  C   A  P +++     +NL
Sbjct:   97 LDALKVLSLRSNSLFGTLPSDILSLPSLEYLYLQHNNFSGELTTNSLPSISKQLVVLDLSYNSLSGNIPSGLRNLSQITVLYLQNNSFDG--PIDSLDLPSVKVVNLSYNNLSGPIPE---HLKKSPEYSFIGNSLLCGPPLNACSGGAISPSSNLPRPLTENL 255          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 55/185 (29.73%), Postives = 85/185 (45.95%), Query Frame = -2
Query:  371 LDLSNNNLHGPIPPCFDNT--------------------TLHESYSNSSSPDEQFE--IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 856
            +DLS+N L+  +P  F +                      LHE+       + +F+  I   I GH+       H         + +I+ G      L  L+L+CN+      P+IG L+ +  LNLS  NLT  IP   S L H++ LDLS+N L G +P  ++ +K +EV  ++ N L G+IP
Sbjct:  190 IDLSSNRLNESLPVGFGSAFPLLKSLNLSRNLFQGSLIGVLHENVETVDLSENRFDGHILQLIPGHKHNWSSLIHLDLS-DNSFVGHIFNGLSSAHKLGHLNLACNRFRAQEFPEIGKLSALHYLNLSRTNLTNIIPREISRLSHLKVLDLSSNNLTGHVP--MLSVKNIEVLDLSLNKLDGDIP 371          

HSP 2 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  371 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 643
            LSLL  L+LS N++   +P  IGN   + TL+LS N+++G IP+  SNL ++ +L L NN     +P +LV  ++L    ++ N L+  +P
Sbjct:  112 LSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLP 202          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = -2
Query:  305 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 634
            L  L LS N+  G  PP I +L R+  L++SHNN +GSIPS  + L  + SL+L  N+ NG +P   +    L  F+V+ NNL+G IP      + F+ SS+  N  LCG
Sbjct:  122 LKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLPS--LNQSFLTSFNVSGNNLTGVIPV-TPTLSRFDASSFRSNPGLCG 228          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  248 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPE--ASIGN 634
            L  L L  N+  G IP  + +L+ +  LNL+ N  +G I S F NL  +++L L NNKL+G     L++L  +L+ F+V+ N L+G IP+       F+  S+ G T LCG PL +C +  T+P    S+GN
Sbjct:  121 LRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSG----SLLDLDLSLDQFNVSNNLLNGSIPK---SLQKFDSDSFVG-TSLCGKPLVVCSNEGTVPSQPISVGN 244          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 47/136 (34.56%), Postives = 77/136 (56.62%), Query Frame = -2
Query:  245 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNE 652
            G++L+L   L+L  N + G IP ++G+L  + +L+L  N+++G IPS+   L  +  L L+NN L+G+IP  L  ++ L+V  ++ N LSG+IP     F+ F   S+  N+ L  LP P   S +  P    G +
Sbjct:   96 GQLLNL-QYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIPV-NGSFSLFTPISFANNS-LTDLPEPPPTSTSPTPPPPSGGQ 227          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  410 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 691
            F +T  N +Y+       ++S LDLS +KL G I P I NLT++Q L+LS+N LTG +P   +N+K +  ++LSNN L G IP  L++ K L++
Sbjct:  398 FLWTGLNCSYMNMSTSPRIIS-LDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQALLDRKNLKL 490          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = -2
Query:  314 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTF 643
            L  L+  DLS N L G+IP Q+     I  L+ S N L G++P + S +K+++S++L  NKLNG++P    +L  LE    + N LSG++P+  A   +  +   + N F
Sbjct:   91 LKSLTTFDLSKNNLKGNIPYQLP--PNIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRF 198          

HSP 2 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 37/125 (29.60%), Postives = 66/125 (52.80%), Query Frame = -2
Query:  374 FSIEGHQGFLEKQNHEI--FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 742
            F + G +G+L      +  F+ +  N+      ++   ++ LD S N+L G++P  +  +  +Q++NL  N L G +P  F  L  +E+LD S NKL+GK+P     L +L+   +  N  +G+I
Sbjct:   78 FELGGSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGDI 202          
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  341 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN 604
            L GHI P I  L  +  L LS  NLTG +P   S LK++E +DLS N L+G IP  L  L+ LE   ++ N L+G IPE    F TF+
Sbjct:  107 LTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPE---SFGTFS 191          
The following BLAST results are available for this feature:
BLAST of CX671778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
Y5374_ARATH1.948e-1333.87Probable LRR receptor-like serine/threonine-protei... [more]
RCH1_ARATH2.544e-1333.57LRR receptor-like serine/threonine-protein kinase ... [more]
Y5516_ARATH3.322e-1332.32Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5815_ARATH4.339e-1329.73Probably inactive leucine-rich repeat receptor-lik... [more]
Y5720_ARATH4.339e-1340.91Probable inactive receptor kinase At5g67200 OS=Ara... [more]
RLK90_ARATH5.667e-1337.88Probable inactive receptor kinase RLK902 OS=Arabid... [more]
SERK4_ARATH1.262e-1234.56Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y5169_ARATH2.153e-1242.55Probable LRR receptor-like serine/threonine-protei... [more]
SRF5_ARATH2.153e-1235.45Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
PGIP2_ARATH2.153e-1245.45Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B03-C5-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671778 ID=CX671778; Name=CX671778; organism=Citrus sinensis; type=EST; length=860bp
TTTTTTAGAACTTAAAGAATCGTAATTAAACTGCTAATTAATTTCAATGA
CAATATCTTGTTGCAATAAGATTGTTTACAACAAAATAGTAACATTAAGT
TATCCACATTTCAACAAAGTAAAACCATCTACGTCGCCAATAAGAATTTA
CATATAAAACAATAACAATTCCGAATATCACAATTACGTACGATGTTGTA
AATGTGATAAAGAAACTGTCCATATCAATTAAATTATCATCTTGTTCATT
GCCAATTGAAGCCTCCGGCATAGTTGCTGGTGATCTGCAAATGGGCAATG
GCAGTCCACAAAGAAAAGTATTTCCCTCATAGCTACTCTCGTTGAAGGTT
GCAAATTGTGCTTTCCATTCTGGAATTTCGCCTGATAAGTTATTGTATGC
CACACTGAAAACCTCCAATGTCTTTAACTCCACTAGTTGATGAGGGATTT
TCCCATTCAATTTGTTGTTGGAAAGATCCAAACTTTCGACATGCTTCAAG
TTTGAAAATGTTGATGGGATCGATCCTGTCAAGTTATTGTGCGAGAGATT
CAATGTTTGAATCCTTGTCAAATTTCCAATTTGAGGAGGAATATGACCAA
TTAGCTTGTTGCAAGAAAGATCAAGTCCTGATAGGAGGCTAAGCACTTTT
CCTTGGTAAATGTACGCAATGTTCTTTGTTGTGAACTCAAAAATTTCATG
GTTTTGCTTTTCTAAAAATCCCTGATGGCCTTCGATGGAAAAAAATATTT
CAAATTGCTCATCAGGACTAGAACTATTGCTGTAACTTTCATGAAGTGTG
GTGTTATCAAAGCAAGGAGGAATAGGACCGTGAAGATTATTATTAGAAAG
ATCTAACAAT
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