CX671778

Overview
NameCX671778
Unique NameCX671778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = -2 
Query:  401 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 634
            ++ L+LS + L GHI     NLT IQ L+LS+N LTG IP   S LK +  L+L NN L G +P +L+E      FS+
Sbjct:  411 ITSLNLSSSGLTGHISSSFSNLTMIQELDLSNNGLTGDIPEFLSKLKFLRVLNLENNTLTGSVPSELLERSNTGSFSL 488
[Close]
BLAST of CX671778 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = -2 
Query:  365 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 649
            K +  LS L L  N L G IP  IG  + ++ ++LS N L G IP++  NL  +  L L NN LNG  P Q  + ++L    V+YN+LSG +P W
Sbjct:  288 KDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIPASLFNLSQLTHLFLGNNTLNGSFPTQ--KTQSLRNVDVSYNDLSGSLPSW 380
The following BLAST results are available for this feature:
BLAST of CX671778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
Y1570_ARATH6.927e-1144.87Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH6.927e-1141.05Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B03-C5-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671778 ID=CX671778; Name=CX671778; organism=Citrus sinensis; type=EST; length=860bp
TTTTTTAGAACTTAAAGAATCGTAATTAAACTGCTAATTAATTTCAATGA
CAATATCTTGTTGCAATAAGATTGTTTACAACAAAATAGTAACATTAAGT
TATCCACATTTCAACAAAGTAAAACCATCTACGTCGCCAATAAGAATTTA
CATATAAAACAATAACAATTCCGAATATCACAATTACGTACGATGTTGTA
AATGTGATAAAGAAACTGTCCATATCAATTAAATTATCATCTTGTTCATT
GCCAATTGAAGCCTCCGGCATAGTTGCTGGTGATCTGCAAATGGGCAATG
GCAGTCCACAAAGAAAAGTATTTCCCTCATAGCTACTCTCGTTGAAGGTT
GCAAATTGTGCTTTCCATTCTGGAATTTCGCCTGATAAGTTATTGTATGC
CACACTGAAAACCTCCAATGTCTTTAACTCCACTAGTTGATGAGGGATTT
TCCCATTCAATTTGTTGTTGGAAAGATCCAAACTTTCGACATGCTTCAAG
TTTGAAAATGTTGATGGGATCGATCCTGTCAAGTTATTGTGCGAGAGATT
CAATGTTTGAATCCTTGTCAAATTTCCAATTTGAGGAGGAATATGACCAA
TTAGCTTGTTGCAAGAAAGATCAAGTCCTGATAGGAGGCTAAGCACTTTT
CCTTGGTAAATGTACGCAATGTTCTTTGTTGTGAACTCAAAAATTTCATG
GTTTTGCTTTTCTAAAAATCCCTGATGGCCTTCGATGGAAAAAAATATTT
CAAATTGCTCATCAGGACTAGAACTATTGCTGTAACTTTCATGAAGTGTG
GTGTTATCAAAGCAAGGAGGAATAGGACCGTGAAGATTATTATTAGAAAG
ATCTAACAAT
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