CX671777

Overview
NameCX671777
Unique NameCX671777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7794 contig Csv1_Contig7794:4..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671777 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMY (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena myxocylindracea GN=ycf65 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 3 
Query:  282 KFIW----MEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 494
            KF+W    +E  I + LDQ +    T P+++YFFWP+ DAW+EL   LESKPWI+    I +LN  TD+IN W +
Sbjct:    3 KFVWKVVCLENKIAICLDQQLADK-TSPVTEYFFWPQSDAWDELNKLLESKPWITLSNRIFVLNILTDLINYWDE 76
The following BLAST results are available for this feature:
BLAST of CX671777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_EUGMY1.668e-1346.67Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B02-C3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671777 ID=CX671777; Name=CX671777; organism=Citrus sinensis; type=EST; length=782bp
CATCAATGGCACTTCAATCTACTGTTAATGGTGCATTCACCACACGCTCC
TCATTCCCTTCCCAAAAACTCACTGTCAAACCCACCAAAACCACCATTCT
TCACCAAAATAGAACCAAACCCATTTCAAGAAACCAAAGGCTCGTTGCTT
TAGCAACCCCAGAATCACTCACAGCTGAAGAAGCAACAACAACATCCACA
GAGACCATCCCAGCAACCCCAGTAGAAACTAAGAAGGCGGGGGTGTCAGT
GAAGCAATTGGAGAAGCCAAGGCTGGTATTGAAGTTTATATGGATGGAGA
AGAACATTGGTCTAGCTCTTGACCAGACGATACCTGGGTATGGCACCATT
CCTTTGAGTCAATACTTCTTTTGGCCGAGAAAAGATGCATGGGAAGAGCT
CAAGACAACTCTTGAGAGCAAACCCTGGATTTCCCAGAAAATGATGATTA
TACTTCTAAATCAGGCCACTGATATTATCAATTTGTGGCAGCAGAGCGGT
GGCAATCTTACTACTTAGTTGGATGAAAATTCCGGTTTCTCTGTGAGTTC
TCATCGTTTTTGTATTTCAGTTATTGGATTTGATTTGTATAATTGAAACC
TTGTTCACATCTGCATTACATTGGACACGAGTTGGCTCTGTAATTTGGTT
GGTGTTGGCAAATTTTTTAATTAATGGGCGTAATGAAATGATAATCATGT
GTACTAGAAAGCCCGTTTGAAGACATATAAAGACTTGTAAGTTGACGGCT
AANATTAGCAAGCTTGTTTTCAGGTTGTTGCT
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