CX671770 | Citrus Genome Database

Overview


Name	CX671770
Unique Name	CX671770
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	906

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACC7 (10 kDa chaperonin OS=Bacillus cereus (strain AH187) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACC3 (10 kDa chaperonin OS=Bacillus cereus (strain 03BB102) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACC1 (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 10987) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACC0 (10 kDa chaperonin OS=Bacillus cereus (strain AH820) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACAN (10 kDa chaperonin OS=Bacillus anthracis GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACAC (10 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACAA (10 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_TREDE (10 kDa chaperonin OS=Treponema denticola GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = -3

Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            +KPLGDRVLVK   VE KT GGI +P TAQ K Q G VVAVG+     K K+ +SV  G +VI+ KYAGT+++ +G +HLIL+ +D+V ++E
Sbjct:    3 VKPLGDRVLVKPDAVETKTAGGIIIPDTAQEKTQRGVVVAVGD----DKEKIKVSV--GQKVIHDKYAGTQIQIDGVDHLILKSNDLVAVVE 88

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_LACHE (10 kDa chaperonin OS=Lactobacillus helveticus GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = -3

Query:  470 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 739
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92

HSP 2 Score: 77.7962 bits (190), Expect = 9.514e-14
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = -3

Query:  170 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 445
            L+P+ DRV +KV + EE T GG++L   +K+KP+ G V+AVG G     G + P+S+  G+ V+Y +Y+G + +  +G  Y+ L   +++A+
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVE-YEGEKYLVLHEKDILAI 92

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_LACH4 (10 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = -3

Query:  470 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 739
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92

HSP 2 Score: 77.7962 bits (190), Expect = 9.514e-14
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = -3

Query:  170 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 445
            L+P+ DRV +KV + EE T GG++L   +K+KP+ G V+AVG G     G + P+S+  G+ V+Y +Y+G + +  +G  Y+ L   +++A+
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVE-YEGEKYLVLHEKDILAI 92

The following BLAST results are available for this feature:

BLAST of CX671770 vs. ExPASy Swiss-Prot

BLAST of CX671770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_BACC7	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus cereus (strain AH187...	[more]
CH10_BACC3	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus cereus (strain 03BB1...	[more]
CH10_BACC1	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus cereus (strain ATCC ...	[more]
CH10_BACC0	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus cereus (strain AH820...	[more]
CH10_BACAN	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus anthracis GN=groS PE...	[more]
CH10_BACAC	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus anthracis (strain CD...	[more]
CH10_BACAA	1.283e-18	46.74	10 kDa chaperonin OS=Bacillus anthracis (strain A0...	[more]
CH10_TREDE	1.675e-18	53.26	10 kDa chaperonin OS=Treponema denticola GN=groS P...	[more]
CH10_LACHE	1.675e-18	50.55	10 kDa chaperonin OS=Lactobacillus helveticus GN=g...	[more]
CH10_LACH4	1.675e-18	50.55	10 kDa chaperonin OS=Lactobacillus helveticus (str...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_13A11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A11-A21-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671770 ID=CX671770; Name=CX671770; organism=Citrus sinensis; type=EST; length=906bp
TTTTTTTTAAGCAAAAAACAAGCAGCAATTCGATTGATCAAGCTGCAATT
CTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAAC
TCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCGCTCAAGTAA
ACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCA
ATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGA
ATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTT
CCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGT
TTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTC
AGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCT
TGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCCCTCAATATG
AGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCGAATA
GATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAGTCTTCCCAA
CTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGAGGCTTTGTT
TGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTCCTCTACAGT
CTTGATTTTCACCAGCACTCTATCACCCAAAGGTTTAATTGAAGTGTACT
TGGGAGCCACGACTGCAGCGGCTTTAACGACCAAGCGACGGAAAGAGCGT
TGGCTGGGAGCACCTCCGACGGAAGCGAACTTGACGGAAGACGGTCTGAG
ACCATCGAATGAAGTCAAGCTCCTTGCTGGAACCTTAATTGATGACGCTG
TTAGCT