CX671770

Overview
NameCX671770
Unique NameCX671770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:137..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.884e-20
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            +KPLGDRV+++    EEKT  GI LP TA+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++++G  +LILRE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93          

HSP 2 Score: 88.5817 bits (218), Expect = 5.390e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            LKPL DRV I+  E EE TA G++L + +KEKP  G V+AVG G + E G +  L +  G++V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVK-YDGKEYLILRESDILAII 93          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 43/100 (43.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:  164 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 463
            T  +  +KPL +RVF+KV+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D K   G  Y+ L   +++A+++
Sbjct:    5 TLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIVN 103          

HSP 2 Score: 94.7449 bits (234), Expect = 7.521e-19
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  467 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 745
            +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK     T+ ++ VK G +V+YSKYAGT+++  G  +++L E D++ I+
Sbjct:    9 STVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  164 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 454
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K   G  ++ L   +++A+++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGGDEFVLLTEKDILAIVN 103          

HSP 2 Score: 89.3521 bits (220), Expect = 3.160e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  467 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 745
            +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++  G   ++L E D++ I+
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGGDEFVLLTEKDILAIV 102          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  164 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 454
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K S    Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLST-DEYVLLSEKDILAVVN 103          

HSP 2 Score: 87.8113 bits (216), Expect = 9.193e-17
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  467 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 745
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++ +   +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDEYVLLSEKDILAVV 102          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  167 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 454
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102          

HSP 2 Score: 87.8113 bits (216), Expect = 9.193e-17
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  467 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 745
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  +++L E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_NOCSJ (10 kDa chaperonin OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = -3
Query:  164 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 448
            ++KPL DR+ +K  +AE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR PL +  G+ V+YSKY G + K + G  Y+ L A +V+AV+S
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTVGDKVIYSKYGGTEVKYA-GEEYLILSARDVLAVVS 97          

HSP 2 Score: 80.8777 bits (198), Expect = 1.124e-14
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = -3
Query:  467 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK---TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 742
            +IKPL DR++VK    E+ T  G+ +P TA+ KPQ GEV+A+G G+      +  LD++V  G +VIYSKY GTE+++ G  +LIL   DV+ ++
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTV--GDKVIYSKYGGTEVKYAGEEYLILSARDVLAVV 96          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  464 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 742
            +++PL DR+LVK    E KT GGIF+P TA+ KPQ GE+VAVG GK     K + + +K G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95          

HSP 2 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  167 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 448
            +L+PL DR+ +K  E E  TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K  +G  ++ +R  +++ V+
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIK-IEGQEFLIMREDDILGVI 94          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            ++P+ DR++VK    E KT GGI++P TA+ KPQ GEVVAVG GK     K L + VK G +V++ KY+GTE++  G ++LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVIE 95          

HSP 2 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = -3
Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            L+P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K  +G +Y+ +R  +++ V+
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVK-VEGQDYLIMREDDILGVI 94          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_CLOTH (10 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.160e-19
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  464 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 742
            +I+PLGDRV+VK+   EE T  GI LP +A+ KPQ  EVVAVG G  V   ++ + VK G +VI SKYAGTE++F+G  + ILR++D++ ++E
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTVVDGKEVKMEVKVGDKVIISKYAGTEVKFDGQEYTILRQNDILAVVE 94          

HSP 2 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  167 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 448
            +++PL DRV +K+ E EETT  G++L  ++KEKP +  V+AVGPG +  +G    + +  G+ V+ SKYAG + K  DG  Y  LR ++++AV+
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTV-VDGKEVKMEVKVGDKVIISKYAGTEVK-FDGQEYTILRQNDILAVV 93          
BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_CLOBB (10 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.515e-19
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V  TK+++ VK G +V+YSKY+GTE++ +G  ++IL++DD++ I+E
Sbjct:    3 IKPLGNRVVIKKLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94          

HSP 2 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            +KPL +RV IK  EAEE T  G++LT ++KE P    V+AVGPG +  +G +  + +  G+ V+YSKY+G + K  DG  Y+ L+  +++A++
Sbjct:    3 IKPLGNRVVIKKLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSI-VDGTKIEMEVKVGDKVLYSKYSGTEVK-LDGEEYMILKQDDILAIV 93          
The following BLAST results are available for this feature:
BLAST of CX671770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_BACHD8.884e-2053.2610 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_TRIEI1.160e-1943.0010 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_SYNPX1.160e-1945.3610 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]
CH10_PROMM1.160e-1946.3910 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM91.160e-1946.8810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_NOCSJ1.160e-1947.3710 kDa chaperonin OS=Nocardioides sp. (strain BAA-... [more]
CH10_GEOSL1.160e-1948.9410 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_GEOSF1.160e-1949.4610 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_CLOTH1.160e-1950.5410 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH10_CLOBB1.515e-1950.0010 kDa chaperonin OS=Clostridium botulinum (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A11-A21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671770 ID=CX671770; Name=CX671770; organism=Citrus sinensis; type=EST; length=906bp
TTTTTTTTAAGCAAAAAACAAGCAGCAATTCGATTGATCAAGCTGCAATT
CTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAAC
TCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCGCTCAAGTAA
ACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCA
ATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGA
ATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTT
CCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGT
TTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTC
AGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCT
TGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCCCTCAATATG
AGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCGAATA
GATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAGTCTTCCCAA
CTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGAGGCTTTGTT
TGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTCCTCTACAGT
CTTGATTTTCACCAGCACTCTATCACCCAAAGGTTTAATTGAAGTGTACT
TGGGAGCCACGACTGCAGCGGCTTTAACGACCAAGCGACGGAAAGAGCGT
TGGCTGGGAGCACCTCCGACGGAAGCGAACTTGACGGAAGACGGTCTGAG
ACCATCGAATGAAGTCAAGCTCCTTGCTGGAACCTTAATTGATGACGCTG
TTAGCT
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