CX671770 | Citrus Genome Database

Overview


Name	CX671770
Unique Name	CX671770
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	906

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.585e-19
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = -3

Query:  467 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 739
            IKPLGDRV+++I   EEKT  GI LP TA+ KPQ G+VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93

HSP 2 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            +KPL DRV I++ E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG + K  DG  Y+ LR S+++AV+
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVK-YDGKEYLILRESDILAVI 93

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_GEOUR (10 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -3

Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            ++P+ DR++VK    E KT GGIF+P TA+ KP  GEVVAVG GK     K L + VK G +V++ KY+GTE++  G + LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIKVEGQDFLIMREDDILGVIE 95

HSP 2 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            L+P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K  +G +++ +R  +++ V+
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIK-VEGQDFLIMREDDILGVI 94

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            ++PL DR+LVK    E+ T GGIF+P TA+ KPQ GE+VAVG GK     K + I +K G +V++ KYAGT+++  G + LI+REDD++G++E
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVIE 95

HSP 2 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            L+PL DR+ +K  E E+ TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K  +G +++ +R  +++ V+
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIK-VEGEDFLIMREDDILGVI 94

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_DESAA (10 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -3

Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            ++PL DR+LVK    E KT GGI +P TA+ KP  GE+VAVG G+     TK+ + VK G +V++ KY+GTE++  G  +LI+REDDV+GI++
Sbjct:    3 LQPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVKIEGEEYLIMREDDVLGIVQ 95

HSP 2 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            L+PL DR+ +K    E  T GG+++ + +KEKP+ G ++AVGPG   E+G +  L +  G+ V++ KY+G + K  +G  Y+ +R  +V+ ++
Sbjct:    3 LQPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVK-IEGEEYLIMREDDVLGIV 94

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_CLOAB (10 kDa chaperonin OS=Clostridium acetobutylicum GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = -3

Query:  464 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 739
            I+PLGDRV++K    EE T  GI LPS+A+ KPQ  EVVAVG G  V   ++ + VK G +V +SKY+GTE++ +    LILR+DD++GI+E
Sbjct:    3 IRPLGDRVVIKRLEAEETTKSGIVLPSSAKEKPQMAEVVAVGPGGVVDGKEIQMQVKTGDKVFFSKYSGTEIKVDNEELLILRQDDILGIVE 94

HSP 2 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            ++PL DRV IK  EAEETT  G++L  ++KEKP +  V+AVGPG +  +G    + +  G+ V +SKY+G + K  D    + LR  +++ ++
Sbjct:    3 IRPLGDRVVIKRLEAEETTKSGIVLPSSAKEKPQMAEVVAVGPGGV-VDGKEIQMQVKTGDKVFFSKYSGTEIK-VDNEELLILRQDDILGIV 93

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_ARTAT (10 kDa chaperonin OS=Arthrobacter aurescens (strain TC1) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = -3

Query:  167 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 445
            +KPL DR+ ++  EAE+TTA GL++ ++++EKP  G V+A+GPG  D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVK-TGGNEYLVLSARDVLAIV 96

HSP 2 Score: 78.9518 bits (193), Expect = 4.270e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = -3

Query:  467 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 742
            SIKPL DR++V+    E+ T  G+ +P +AQ KPQ GEVVA+G G+      ++ + V  G  VIYSKY GTE++  G  +L+L   DV+ I+
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVKTGGNEYLVLSARDVLAIV 96

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_MYCTU (10 kDa chaperonin OS=Mycobacterium tuberculosis GN=groS PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3

Query:  164 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 448
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 84.3445 bits (207), Expect = 1.016e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = -3

Query:  467 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 742
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_MYCTA (10 kDa chaperonin OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3

Query:  164 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 448
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 84.3445 bits (207), Expect = 1.016e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = -3

Query:  467 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 742
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_MYCS2 (10 kDa chaperonin OS=Mycobacterium smegmatis GN=groS PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3

Query:  164 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 448
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 84.3445 bits (207), Expect = 1.016e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = -3

Query:  467 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 742
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

[Close]

BLAST of CX671770 vs. ExPASy Swiss-Prot
Match: CH10_MYCBT (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3

Query:  164 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 448
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 84.3445 bits (207), Expect = 1.016e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = -3

Query:  467 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 742
            +IKPL D++LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98

The following BLAST results are available for this feature:

BLAST of CX671770 vs. ExPASy Swiss-Prot

BLAST of CX671770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_BACTR	2.585e-19	50.00	10 kDa chaperonin OS=Bacillus thermoglucosidasius ...	[more]
CH10_GEOUR	3.376e-19	49.46	10 kDa chaperonin OS=Geobacter uraniireducens (str...	[more]
CH10_GEOMG	3.376e-19	49.46	10 kDa chaperonin OS=Geobacter metallireducens (st...	[more]
CH10_DESAA	3.376e-19	49.46	10 kDa chaperonin OS=Desulfatibacillum alkenivoran...	[more]
CH10_CLOAB	3.376e-19	51.09	10 kDa chaperonin OS=Clostridium acetobutylicum GN...	[more]
CH10_ARTAT	3.376e-19	45.16	10 kDa chaperonin OS=Arthrobacter aurescens (strai...	[more]
CH10_MYCTU	4.409e-19	47.92	10 kDa chaperonin OS=Mycobacterium tuberculosis GN...	[more]
CH10_MYCTA	4.409e-19	47.92	10 kDa chaperonin OS=Mycobacterium tuberculosis (s...	[more]
CH10_MYCS2	4.409e-19	47.92	10 kDa chaperonin OS=Mycobacterium smegmatis GN=gr...	[more]
CH10_MYCBT	4.409e-19	47.92	10 kDa chaperonin OS=Mycobacterium bovis (strain B...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_13A11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A11-A21-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671770 ID=CX671770; Name=CX671770; organism=Citrus sinensis; type=EST; length=906bp
TTTTTTTTAAGCAAAAAACAAGCAGCAATTCGATTGATCAAGCTGCAATT
CTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAAC
TCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCGCTCAAGTAA
ACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCA
ATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGA
ATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTT
CCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGT
TTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTC
AGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCT
TGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCCCTCAATATG
AGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCGAATA
GATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAGTCTTCCCAA
CTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGAGGCTTTGTT
TGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTCCTCTACAGT
CTTGATTTTCACCAGCACTCTATCACCCAAAGGTTTAATTGAAGTGTACT
TGGGAGCCACGACTGCAGCGGCTTTAACGACCAAGCGACGGAAAGAGCGT
TGGCTGGGAGCACCTCCGACGGAAGCGAACTTGACGGAAGACGGTCTGAG
ACCATCGAATGAAGTCAAGCTCCTTGCTGGAACCTTAATTGATGACGCTG
TTAGCT