CX671756

Overview
NameCX671756
Unique NameCX671756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.289e-43
Identity = 85/177 (48.02%), Postives = 124/177 (70.06%), Query Frame = -3
Query:  274 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 804
            RVETGVL+ G  V F P     EV+S+E HH  +++A PGDN+GFNV+ V+ +D++RG VA +  D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+  V+
Sbjct:  254 RVETGVLRVGDKVVFMPPAKVGEVRSIETHHVRIEKAEPGDNIGFNVRGVSKRDIRRGDVAGHL-DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.905e-43
Identity = 85/179 (47.49%), Postives = 118/179 (65.92%), Query Frame = -3
Query:  268 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 804
            RVETGV+K G  V F P G   EVKS+EMHHE + +A PGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  245 RVETGVMKKGDKVVFMPGGAGGEVKSIEMHHEEIPQATPGDNIGWNVRGIGKNDVRRGDVCGHA-DNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIALNKKLDPKTGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 84/179 (46.93%), Postives = 118/179 (65.92%), Query Frame = -3
Query:  268 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 804
            RVETGV+K G  V F P G   EVKS+EMHHE + +A PGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P F+K GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  245 RVETGVMKKGDKVIFMPGGAGGEVKSIEMHHEEIPQAYPGDNIGWNVRGIGKNDVRRGDVCGHT-DNPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLISLDKKLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 83/177 (46.89%), Postives = 122/177 (68.93%), Query Frame = -3
Query:  274 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 804
            RVETGVLK G  V   P     +V+S+E HH  L++A PGDN+G NV+ +A +D+KRG V     + P   A    ++++++ HP  IG GYAPV+  HT+ + V+ +ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  262 RVETGVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGIAKEDVKRGDVLGKPDNVPT-VAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 83/191 (43.46%), Postives = 121/191 (63.35%), Query Frame = -3
Query:  271 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 843
            VY          GR+ETGV+K G  V F P+    +VKS+EMHHE +Q+A PGDN+GFNV+ +A  +LKRG V   + + P      FT+Q++++NHP  I  GY PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G    +EK
Sbjct:  234 VYSITGIGTVPVGRIETGVMKVGDKVIFMPANKAGDVKSIEMHHEPMQQAGPGDNIGFNVRGIAKNELKRGDVCGPANNPPT-VVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 85/190 (44.74%), Postives = 125/190 (65.79%), Query Frame = -3
Query:  274 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 843
            VY          GRVETGVL+ G  V F P G+  EV+S+EMH++ LQ+A PGDN+GF V+ V+  D+KRG VA +  D P   A  F +++ ++ HP  I  GY PV+  HT+ ++ +  E+  K+D ++G+ +E+ P+FLK GDA +V+  P KP+VVE FS+ P LGRFA+RDM +TV +G++  V+
Sbjct:  240 VYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHL-DKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 77/179 (43.02%), Postives = 119/179 (66.48%), Query Frame = -3
Query:  268 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 804
            RVETG +KPG  +   PSG   E+KS+E HH  +  A  GDN+GFN++ +  KD+KRG V  +  + P + A  F +Q+I+++HP  +  GY PV+ CHT+ +A   SE V+KI+  +G   E+ PKFLK GD+ ++K+ P +P  +ETF ++P +GRFA+RDM  T+A G++K + ++
Sbjct:  256 RVETGTMKPGDKIVVMPSGAQGEIKSIETHHTEMPSAEAGDNIGFNLRGIEKKDIKRGDVLGDPANPP-KVAKEFLAQIIVIHHPTALAPGYTPVMHCHTAQVAAIMSEFVSKINPATGAVEEENPKFLKVGDSAIIKIRPVRPTPIETFKEFPEMGRFALRDMGATIAAGIVKEITEE 433          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 83/177 (46.89%), Postives = 120/177 (67.80%), Query Frame = -3
Query:  274 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 804
            RVETGVLK G  V   P     +V+S+E HH  L++A PGDNVG NV+ +  +D+KRG V     + P   A    ++++++ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  262 RVETGVLKVGDKVVIVPPAKVGDVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPT-VAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 83/179 (46.37%), Postives = 115/179 (64.25%), Query Frame = -3
Query:  268 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 804
            RVETG+L  G  V+F PS ++ EVK+VEMHHE + +A PGDNVGFNV+ V   D++RG V   + DDP   A  F +Q+++M HP  I  GY PV   HT+ +A     +  KID  SG+  E+ P F++NGDA +V + P KP+ +E  S+ P LG FA+RDM QT+A G +  V ++
Sbjct:  244 RVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQIVVMQHPSVITEGYTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.235e-41
Identity = 84/179 (46.93%), Postives = 117/179 (65.36%), Query Frame = -3
Query:  268 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 804
            RVETG+L  G  V+F PS ++ EVK+VEMHHE + +A PGDNVGFNV+ V   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  KID  SG+  E+ P F+++GDA +V + P KP+ +E+ ++ P LG FA+RDM QTVA G + SV ++
Sbjct:  245 RVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422          
The following BLAST results are available for this feature:
BLAST of CX671756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_STAMF2.289e-4348.02Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_METMA3.905e-4347.49Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METAC6.661e-4346.93Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_PYRAE4.318e-4246.89Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_PICTO4.318e-4243.46Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_AERPE5.639e-4244.74Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_CENSY9.619e-4243.02Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_PYRCJ3.655e-4146.89Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_HALMA4.774e-4146.37Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_NATPD6.235e-4146.93Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A03-A5-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671756 ID=CX671756; Name=CX671756; organism=Citrus sinensis; type=EST; length=845bp
GACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACAAAATGT
TTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAACTCAATGATA
TAAAACCAAATTCAGAGAATTAAAATGAAGTCTACCGTAAAACAAACTAA
AACATGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAG
ATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCAGCAGACTTGGTGACC
TTGGCACCCGATGGATCCTTCTTTTCAACACTCTTGATCACACCAACAGC
TACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAGT
CGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATT
CCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCC
AGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAAACTTGACAGCAATGT
GGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCA
GGATGGTTCATGATGATGACCTGTGAAGTGAAGTTGGCAGCTTCCCTGGC
CGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGA
CAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGGGCCTCC
TGCAGAGCTTCGTGGTGCATCTCAACAGACTTAACCTCAGTTGTCAATCC
AGAGGGACCAAATGTCACCACCATACCAGGCTTGAGCACACCGGTCTCAA
CGCGACCCACTGGGACGGGTCCAATGCCACCAATCTTGTACACGT
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