CX671756

Overview
NameCX671756
Unique NameCX671756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:88..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 52/177 (29.38%), Postives = 92/177 (51.98%), Query Frame = -3
Query:  277 RVETGVLKPGMVVTFGPSGLTTEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 804
            ++E G +K    V   P   T EV ++ +   E +  ++ GD V   V+     D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAVG +  +
Sbjct:  487 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 47/191 (24.61%), Postives = 92/191 (48.17%), Query Frame = -3
Query:  271 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 843
            V+K         G++E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  495 VFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE 684          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 47/191 (24.61%), Postives = 92/191 (48.17%), Query Frame = -3
Query:  271 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 843
            V+K         G++E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  495 VFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEMKE 684          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 46/191 (24.08%), Postives = 91/191 (47.64%), Query Frame = -3
Query:  271 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 843
            V+K         G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  490 VFKDQGSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 679          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 45/191 (23.56%), Postives = 91/191 (47.64%), Query Frame = -3
Query:  271 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 843
            V+K         G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F +++++ N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  493 VFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 682          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 45/190 (23.68%), Postives = 90/190 (47.37%), Query Frame = -3
Query:  274 VYKXXXXXXXXXGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 843
            V+K         G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  ++
Sbjct:  497 VFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIK 685          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 44/183 (24.04%), Postives = 91/183 (49.73%), Query Frame = -3
Query:  265 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKR---GFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 804
            RVE G + P + +T  P+G+  E +SVE+H++       G+N G  +K   + ++ +   G V S + ++ A        + I++  P  +  GY P ++    H   + +++++K+    GKE+ + P+ + NG+     ++  KP+V++    +  L +FA+ D    V +G +     +D
Sbjct:  300 RVEYGTITPNLKITIQPAGVVGETRSVEIHNKPRSMIPCGENCGVALKGGVIGEIDKVDAGHVISANDENKAVAYPGAKIRTIVVGRPKGLSPGYTPQINFGNCHSPGRIAKILSKV---VGKEVHENPENVANGENFTGIVVFQKPLVIDKMERFQNLAKFALMDSNGVVGIGNVMEPLTRD 479          
BLAST of CX671756 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 45/182 (24.73%), Postives = 86/182 (47.25%), Query Frame = -3
Query:  268 RVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQ---IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 804
            +VE+G +  G  +   P     EV S+     + + A PG+N+   +K +   D  R        + P    +   + V I++ P +       ++ +   HT+   V    L+  ID ++  E++++P F K GDA   +++  + + +E F+  P L RF +RD  +T+A G + ++ KK
Sbjct:  365 KVESGTISVGQSIHIMPGKTKVEVISLTGDICSFKTARPGENITIALKGIEGDDSIRPGSILAEINRPVPVVSEIEAIVYILDMPEERRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTKTSTEIKQKPTFCKVGDAVKCRLVLGRAVCLEEFTTNPQLARFTIRDSTKTIAFGKVINIGKK 546          
The following BLAST results are available for this feature:
BLAST of CX671756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
ERF3_SCHPO2.020e-1529.38Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_HUMAN7.674e-1524.61HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB1.309e-1424.61HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT2.233e-1424.08HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE2.233e-1423.56HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN6.497e-1423.68HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
EF1A_ENCCU2.469e-1324.04Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
ERF3_DICDI6.081e-1224.73Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A03-A5-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671756 ID=CX671756; Name=CX671756; organism=Citrus sinensis; type=EST; length=845bp
GACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAACAAAATGT
TTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAACTCAATGATA
TAAAACCAAATTCAGAGAATTAAAATGAAGTCTACCGTAAAACAAACTAA
AACATGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAG
ATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCAGCAGACTTGGTGACC
TTGGCACCCGATGGATCCTTCTTTTCAACACTCTTGATCACACCAACAGC
TACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAGT
CGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATT
CCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCC
AGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAAACTTGACAGCAATGT
GGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCA
GGATGGTTCATGATGATGACCTGTGAAGTGAAGTTGGCAGCTTCCCTGGC
CGGATCATCCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGA
CAGCAACGTTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGGGCCTCC
TGCAGAGCTTCGTGGTGCATCTCAACAGACTTAACCTCAGTTGTCAATCC
AGAGGGACCAAATGTCACCACCATACCAGGCTTGAGCACACCGGTCTCAA
CGCGACCCACTGGGACGGGTCCAATGCCACCAATCTTGTACACGT
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