CX671749

Overview
NameCX671749
Unique NameCX671749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:193..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 80/212 (37.74%), Postives = 112/212 (52.83%), Query Frame = -3
Query:  282 TRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFT---DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 848
            +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T +       W+ AG            TL   +++ +GW E +RW D   P   + +   P      N   +  + GYPGG +FDPL        G  +   +K++ L+  EIK+ RLAMLA++  +F+
Sbjct:   44 SRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 85/210 (40.48%), Postives = 112/210 (53.33%), Query Frame = -3
Query:  192 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAAFTP 794
            F G TP  +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL K G+      W+ AG Q +      +    +L   + I   WA       ++  G V    +        TD  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP   +A  +A  +P
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGS-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSP 265          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 80/201 (39.80%), Postives = 106/201 (52.74%), Query Frame = -3
Query:  195 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 776
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 83/219 (37.90%), Postives = 113/219 (51.60%), Query Frame = -3
Query:  225 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 854
            A  + VS S+     +R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +   WA       ++  G V    I         D  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GP+++L  H+ADP
Sbjct:   39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWA-----CQVVLMGAVEGYRIAGGPLGEIVDPLYPGGS-FDPLGLAE-RPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADP 250          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 81/205 (39.51%), Postives = 106/205 (51.71%), Query Frame = -3
Query:  225 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 812
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG Q +      +     L   + I   WA       ++  G +    +       G D   PGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA-FDPLGL-ADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 78/191 (40.84%), Postives = 101/191 (52.88%), Query Frame = -3
Query:  225 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 776
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ K IKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 80/205 (39.02%), Postives = 108/205 (52.68%), Query Frame = -3
Query:  225 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 812
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + I   WA       ++  G V    +       G D  YPGG  FDPLG  +  P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA-----VQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGL-ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 80/205 (39.02%), Postives = 108/205 (52.68%), Query Frame = -3
Query:  225 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 812
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + I   WA       ++  G V    +       G D  YPGG  FDPLG  +  P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA-----VQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGL-ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.452e-30
Identity = 80/215 (37.21%), Postives = 112/215 (52.09%), Query Frame = -3
Query:  195 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 812
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G +    +         D  YPGG  FDPLG  +  PE   +++ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAIEGYRVAGGPLGEVVDPLYPGGT-FDPLGL-ADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.452e-30
Identity = 88/219 (40.18%), Postives = 114/219 (52.05%), Query Frame = -3
Query:  192 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 812
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG Q +      +     L   + I   WA       ++  G V    +       G D  YPGG  FDPLG  +  P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI NL  H+ADP   +A  FA  F P
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWA-----TQVVLMGFVEGYRVGGGPLGEGLDPLYPGGA-FDPLGL-ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVP 263          
The following BLAST results are available for this feature:
BLAST of CX671749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4_SPIOL8.426e-3137.74Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB2_PHYPA8.426e-3140.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP8.426e-3139.80Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_WHEAT8.426e-3137.90Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH8.426e-3139.51Chlorophyll a-b binding protein type I, chloroplas... [more]
CB25_TOBAC1.437e-3040.84Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_ORYSJ1.437e-3039.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.437e-3039.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE2.452e-3037.21Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB215_PEA2.452e-3040.18Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671749 ID=CX671749; Name=CX671749; organism=Citrus sinensis; type=EST; length=898bp
TTTTTTTTTCCACCTGAATGTTTTTTATATTCATGGCATCTAAGTGATCA
CACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCTAATCATA
CAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGCTTCCTCT
TGGCCCAAATTTCTCTCCCTTTGCTCGTCATCATCTCACTTGGGGGTGAA
GGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCAATGAGAT
TGTCAATGGGGCCGGTGCCAGTGTAAATGTGCTGGAACCAAGCACCCATC
ACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCCTCAGCTC
CTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCAAACCAAA
GCCCACCTGGGTAACCAACATCGGTGCCGGTGAGCTTGTTGTTGGGGAAG
ATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCCACCGTCT
GCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGGGTGGTGG
TGTCTGTGAAGTACTCTTGCTCCCCAGCTGTGTACCAGGATGGAGTGTTG
AGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTGCAGCTCC
TAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTCCATCTCA
GCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAAGTCTCCG
GGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGAACCAGAG
AGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGATCGTGTTC
CCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACCAAGGA
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